<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23215

Description Uncharacterized protein
SequenceMELLTPLPPPPSTPPNFPSGYSSMPSFRRGFYRTSQIVAPQSREVVVEEEEQLQGSKVFVAVGKYVDKGVALVQWACKTFGNSEICILHVLQPSPYIPTLLGKLPVTQANAKMVAAFRYAEREEAWKLMSRYLSVCCKSKVKATVAIVESDQVLKGILDFVNKHNIRKLIIGAIPDCVKVKKSSRKASYAATKFPTFCEIFFVYKGRLIWIRQPPECSSFIAPISPNTQAGAVDVCGLRSQCLKSCENEVILFPERVQSSLSRDLLSSGIKKLVLEAGIPSQTDLRVKDFSSSSRSNLISVPSLSISTSSIHDISCASSVEQMVPPDAEMESLYKQLAEVGTEFESSRNEAFAEILKRKKLEAEAEEAIRKIKAFESAHAREVKLRKEAEDALETTLLEKKKLLMEKKEKTYELCKAMRNIALLDCRAQEADRRCEEITGELTLIHSSISTLQQEKQKLKQKNTEAMHWINSWKNRGKYGGQSAIDLAECSVSLGLVEFSSSDLQTATCNFSESFRIGQGGYGDVFKGELSDKTVVIKQLHHYNMQQPSQFFEQVEILAKLRHPHLVTLLGVCPGSWCLVHEYFPGLSLQDRLFWKNNTRPMKWKMRARILAEIASALLFLHSSYPEKIVHGDLRPENVLIDSTGSCKICDVGISSLIPKQALRCPSFDRLSEPKGLFAYTDPEFHETGAMTPKSDIYAFGLIILQMLTGRTLTGLVNEVRRAVLYAQLDSLLDSSAGEWSTFVSRRLAELALQCCELNSRDRPELTSSLVMELKNLNESEEQSVPSFFLCPIRQDIMNDPQVAADGFTYEGEAIEGWLESGHDTSPMTNLKLSHLELTPNHALRLAIKDWLCNL
Length855
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.208
Instability index52.24
Isoelectric point7.20
Molecular weight95734.18
Publications
PubMed=22660326

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23215
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.23|      49|     103|     134|     184|       2
---------------------------------------------------------------------------
  134-  184 (73.78/61.37)	SVCCKSkVKATVaIVESDQVLKGILDFVNKHNIRKLIIGA.IPDC..VKVKKSS
  240-  291 (72.46/50.74)	SQCLKS.CENEV.ILFPERVQSSLSRDLLSSGIKKLVLEAgIPSQtdLRVKDFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.83|      41|     120|      77|     118|       3
---------------------------------------------------------------------------
   77-  118 (69.06/48.10)	CKTFGNSEICILHVLQPsPYIPTLLGKL.PVTQANAKMVAAFR
  198-  239 (72.78/46.39)	CEIFFVYKGRLIWIRQP.PECSSFIAPIsPNTQAGAVDVCGLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.63|      27|     121|     473|     501|       4
---------------------------------------------------------------------------
  473-  501 (40.41/39.04)	WKNRG...KYGGQSAIdLAECSVSLgLVEFSS
  595-  624 (44.22/30.99)	WKNNTrpmKWKMRARI.LAEIASAL.LFLHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.69|      23|     332|     420|     442|       7
---------------------------------------------------------------------------
  410-  437 (33.34/24.26)	KTYELckamrNIALLDCRAQEADRRCEE
  438-  465 (30.35/21.37)	ITGELtlihsSISTLQQEKQKLKQKNTE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23215 with Med32 domain of Kingdom Viridiplantae
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