<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23211

Description Uncharacterized protein
SequenceMAKSSGTLDKWRDYFRTANSDIFDIIEYAVMVAAVDCPKEFKMRRDRIAEMLFTCKVTMCFGCEKVDLAVPIAGNDDEGKIKSKDEFGGSKESKVNSRIDHHDVEMNVNQVSNYSYGEAEALTEEMEEETQTFGEVMRIKDVIDNNQAESAELFECLRRLQLMALSVETLKATEIGKSVNSLRKHNSKDVRHLSRTLIEDWKVLVDEWVNATAAFAGNESTPESMKASVVDQDEEGLPSPPLDDLAFFSAQTTSIELSQFFDGMDDDGNPRNSGGFNVNRGNGRKPSLGNQNIPLQKKQSADCFNASPKENKGEQQKKQEAVIKKQTTVAKPTKPSGGEFGPGRPTKPALEQKLKVNEMNFQQKSDKGTIQKRPVASQQNKLRHSDEDAVQVKLEATKRKLQERYQEAEKAKRQRTIQVMELRDIPKKGPNQGVGLKNAHMRPGNNNRHWTNGRR
Length455
PositionUnknown
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.06
Grand average of hydropathy-0.880
Instability index39.60
Isoelectric point7.59
Molecular weight51188.97
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23211
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.66|      17|      18|     365|     382|       1
---------------------------------------------------------------------------
  365-  382 (24.08/23.71)	SDKGTIQKRPVASQQnKL
  385-  401 (26.58/19.75)	SDEDAVQVKLEATKR.KL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.49|      52|      74|     217|     270|       2
---------------------------------------------------------------------------
  217-  270 (85.35/62.47)	GNESTPESMKAS.....VVDQDEEGLPSPPLDdlAFFSAQTTSIELSQFFDGMDDDGNP
  289-  345 (83.13/54.58)	GNQNIPLQKKQSadcfnASPKENKGEQQKKQE..AVIKKQTTVAKPTKPSGGEFGPGRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23211 with Med26 domain of Kingdom Viridiplantae
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