<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23208

Description Uncharacterized protein
SequenceMKKKNKELRQWRAYFRSSTLDIFYIIESAIRVAAIDYPQEFKLRRDGINELLFSFGDLDSDEVENVVDVEGDKGKRKCKNELVRGLNDCDVEKRKNDSNVEVEALSDEIEEESRVVNQALPIKKSYAEVEALSDEIEEESRVVEEALSIKKIIDNSQNESDSNVYKSLKRLQTMGLSVEILQKTEIGKSVSTLRWHNSKNIRCLVRKMVKEWIEMVQEWVDARAALTERKSESTKAFVVDEEEGGLPAPPLEDLPFLFSQTTSKIELSQIFDGMDDDGNVIISVDQKDEQEKKRTSLVKPNKPPGVNPGRGRPTKRALEQKLNNDHEMKLQEKFDKRKTQTRPVHTQQNKLKCLDEDAERLNLEATKRKLHECYQQVENAKRHRTVQVMSLKDIPQQGRGIRKPHNRRQ
Length409
PositionUnknown
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.05
Grand average of hydropathy-0.908
Instability index61.27
Isoelectric point6.67
Molecular weight47346.04
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23208
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.03|      26|      26|      98|     123|       1
---------------------------------------------------------------------------
   98-  123 (48.03/32.40)	SNVEVEALSDEIEEESRVVNQALPIK
  125-  150 (47.00/31.56)	SYAEVEALSDEIEEESRVVEEALSIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.17|      31|      38|     320|     352|       2
---------------------------------------------------------------------------
  290-  304 (18.18/ 6.23)	............QEK.......KRTSLVKP.....NKPP
  320-  352 (50.99/34.51)	QKLN.NDHEMKLQEKFD.....KRKTQTRPVhtQQNKLK
  359-  392 (38.00/19.64)	ERLNlEATKRKLHECYQqvenaKRH...RTV..QVMSLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.87|      24|      28|      42|      65|       3
---------------------------------------------------------------------------
   42-   65 (40.44/28.69)	KLRRDGINELLFSFGDLDSDEVEN
   73-   96 (42.43/30.46)	KGKRKCKNELVRGLNDCDVEKRKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23208 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EATKRKLHECYQQVENAKRHRTVQVMSLKDIPQQGRGIRKPHNRRQ
2) IISVDQKDEQEKKRTSLVKPNKPPGVNPGRGRPTKRALEQKLNNDHEMKLQEKFDKRKTQTRPVHTQQNKLKCLDEDAERLN
364
281
409
362










Molecular Recognition Features






MoRF SequenceStartStop




1) GRGIRKPHNRR
398
408