<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23197

Description Uncharacterized protein
SequenceMAMVTGKQSSLWDGVIELTKLAQLKGTDPLMWAMQLSSTLNSAGHSLPSTDVANLLVSHICWDNNDPIAWKLLEKALALRIVPPMFVLALLSNRVVPTRRSYPVAYRLYMELLKIYAFSLPSLINGPNYQKIMEAINDTLHVSQIFELQGSESGLIVVGFIFTIVWELLDASLDDEGLLELTVEKKSRWPITSQDMGLNNHDGFAGGRTEKHEVLSKSNTVMAIEIIGELFRDKVTSAILYLVRTNMPTHWESFTQNLRLLVSNSSALRTSKNISPEALVQLTSDDHVVLSRKCKTSSHKRSHAVMASGSLGSSADQCHGASPAVLWLPIDLFLEDIMDGSQVAVTSAAETLTGLVKALQAVNSSPWKDTFLGLWIAALRLVNRERDSSEGPVPRLDTCLCVLLSITPLAIVNLLEEEEMNCSSTNQRKESSRKRHQDLVFSLQQLGDFEGLLTPPLPAAPLAILAAAKAMMFLSGVSVGSGYFEGMSLNDIPANCVGNLRHLIVEACIARNILDTSAYLWPGYVKGRCNQVPRSVSSQMPGWSSLMKGSPLTPQMVSSLVSTPASSLAEIEKIYEIAVNGSDDDKVSAAAILCGASFARGWNIQEHTVLFITRLLSPPVPANYSGTESHLIGYARFLNVLLVGVSSIDCVQIFSLHGLVPQLAGALMPICEAFGSCAPNVKWIVMSEEISSHAVFSNAFTLLLKLWRFDQPPLEHRMDAAPVGAHLTPEYLLLVRNSQLTSSDDLQKDQSKIKLLTRLSSPLSGEPIFLDSFPKLTLWYRQHQACIASPLSGLVPGTPVHQIVEALLNFMFRKINRTGQSLTPAISGSSSSSGPGNEDVSLHLKLPAWDILEAVPFVLDAALTGCAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKLASMNGTDWPSPAANLATVEQQIKKILAATGVNVPSLTVGGNSPATLPLPLAALVSLTITYKLDRSTDRFLNLMGPALSNLATGCPWPCMPVMVALWAQKVKRWSDFLVFSASRTVFHHNRDAVVQLLRMCFAATLGQTTSSIASNGGVGALLGHGYGSHFLGGISPVAPGLLYLRVHRAVPNVMFMTEEVVSLLMHSVRDIASSLLPAEKLKNSKYAKKYGQASLAGALTRVKLAATLSASLVWITGGVVLVQSLMKETLPSWFISAHGTEPSGGMSGGLVATLGGKALACFAVISGTFAWGVDSSSPAAKRRSSTLEAHLEFVAGVLHGKISLGCNKSTWKSYVSGLISLIVRCTPNWLLEVDVEVLKSISMGLKQWGEEELALSLLSSSGIGAMGATAEMIVEGGMNFVK
Length1321
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy0.209
Instability index44.43
Isoelectric point7.02
Molecular weight142415.29
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23197
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     366.46|     118|     155|    1039|    1162|       1
---------------------------------------------------------------------------
 1039- 1162 (178.64/133.10)	CFAATLGQTTSSIASNGGVGALLGHGYGSHfLGGISPVAPGLLYLRVHRAVPNVmfMTEEVVSLLmhsVRDIASSLL..PAEKLKN.SKYAKKYGQASLA.GALTRVKLAATLSASLVWITGGVVLVQ
 1200- 1321 (187.82/120.34)	CFAVISGTFAWGVDSSSPAAKRRSSTLEAH.LEFVAGVLHGKISLGCNKSTWKS..YVSGLISLI...VRCTPNWLLevDVEVLKSiSMGLKQWGEEELAlSLLSSSGIGAMGATAEMIVEGGMNFVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.87|      33|     836|      12|      72|       2
---------------------------------------------------------------------------
   23-   55 (57.48/34.19)	QLKGTDPLMWAMQLSSTLNSAGHSLPSTDVANL
  539-  571 (54.40/16.62)	QMPGWSSLMKGSPLTPQMVSSLVSTPASSLAEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.53|      50|     378|     250|     421|       4
---------------------------------------------------------------------------
  320-  375 (80.87/161.92)	GASPAVLWLP....IDLFLEDIMDGSqvavTSAAETLTGlvKALQAVNSS.PWK..DTFLGLW
  949- 1005 (78.67/ 6.21)	GNSPATLPLPlaalVSLTITYKLDRS....TDRFLNLMG..PALSNLATGcPWPcmPVMVALW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.85|      25|      71|     686|     711|       5
---------------------------------------------------------------------------
  686-  711 (40.45/30.57)	MSEEISSHAVFSNAFTlLLKLW.RFDQ
  759-  784 (42.40/27.24)	LSSPLSGEPIFLDSFP.KLTLWyRQHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.79|      52|     160|     452|     507|       6
---------------------------------------------------------------------------
  452-  507 (81.69/59.50)	LLTPPLPA....APLAILAAAKammFLSGVSVGSGYFEG...MSLNDIPANCVGNLRHlIVEA
  615-  673 (82.10/48.11)	LLSPPVPAnysgTESHLIGYAR...FLNVLLVGVSSIDCvqiFSLHGLVPQLAGALMP.ICEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.36|      25|     777|     250|     282|      10
---------------------------------------------------------------------------
  250-  282 (33.49/50.50)	HWESFtqnlrlLVsnSSALRTSKNISPEALVQL
 1011- 1035 (46.87/38.47)	RWSDF......LV..FSASRTVFHHNRDAVVQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23197 with Med33 domain of Kingdom Viridiplantae
Unable to open file!