<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23187

Description Uncharacterized protein
SequenceMLRVPVSTPSSGEMEHNNTHQLRSRSHQQFHPSRPAILDLFNLYLGLKNSGQKSDDSIREPPNKTQKRVTALNRELPPRNEQFILDFGQLQSQFTDKEQLSAVAESVLISLVIHCSSHAPRAEFIQFAICSLSSIGFINWDSFLPSLLSSVSSTEISASQANLPSAAVSSANLTSGLLPSSTTVASTSIFHSSNPASPLPAVHGIGSPLHSVAEPSSSAALSPMKSSDVNGTSQQSVAKVNLLLNDNATSSLRQLCCKIILTGLDSNLKPVTHAEVLHHMLNWLINWDQKLHGIDELDSTKYWKPDKALIKWLHSCLDVIWLLVENDKCRIPFYELLRSGLQFLENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTPRLLPQASANSSGEAVANMRYSPITYSSVLGEPLHGEDLAASIQKGSLDWERALRCLKHALRNAPSPDWWRRVLLVAPCHRVHAQAPTPGAVFTSEMVCEAVIERIVELLKLTNSEINCWQEWLIFSDIFFFLMKSGCVDFVEFVDKLVFRLQEGDQQILRTNHVTWLLAQIIRVELVMNALNTDSRKVETTRKILSFHKEEKSSDPNNPQSILLDFISSCQNLRIWTLNTATREYLNNEQLQKGKQIDEWWRQVNKGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVMNWLTSAGVTEHLPGPNLQSNERLMVMREVCPLPISLLSGLSINLCLKVAFQLEESMFSGQAVPSIAMVETYCRLMLISPHSLFRSLLTHLTSRNPTTLTKPGNTILVFEILNYRFLSLYRYQGKSKTLMYDVTKMISTLKGKRGDHRIFRLAENLCMNLILSLRDFFFVKREGKGPTEFTETLNRITIVTLAIIIKTRGIGEFEQLLYLQTMLEQILATSQHTWSEKTLRYFPSILRDALSGRMDKRGLAIQAWQQAETTVINQCTQLLSPSADPSYVVTYINHSFPQHRQYLCAGAWILMHGHPENINCTNLGRVLREFSPEEVTANIYTMVDVLLHHIHLELQRGHPLQDLMLKACGNLSVFIWNHELLPPDILLLALIDRDDDPHALRIVINLLDSKELQQRVKVYLLNRGPPEHWLSPGPFKRVELQKALGNYLSWKERYPTFFDDIAARLLPVIPLIIYRLIENDAMDAADRILQVYSPFLHYYPLNFTFVRDILSYFYGHLPGKLILRILNILDIKKIPFSESFPQHINSSNAAMCPPLDYFATLLLGLVNHVIPALNNSSKCAVMGDFANNSTRAPHGKIPATSQSGTTNSFDGQKPYYQMQDPGISTQLTLETAVIELLSLPVSPSQIVSSLVQIVVHIQPTLVQSSNGLHGAPGSSGQGSILPTSPSGGSTDSLGATRTTPSLSGLNTSNFVSRSGYTCQQLSCLLIQACGLLLAQLPPEFHVQLYVEAARIIKESWWLTDAKRSVGELESAVSYALLDPTWAAQDNTSTAIGNIVALLHAFFCNLPQEWLEGTHLIIKHLRPVTSVAVLRISFRIMGPLLPRLVNAHTLFSKTVSLLLNILVDVFGKNSQLSAPIEATEISDLIDFLHHVIHYEVASSKPRSEILALFGRAAENLRPDVQHLLSHLNTDVNTSAIIMLFLGRRNMSRSDFTWIIYILLQQSSLDVHVEKMYRVIRIICIAYCLIASCLKETSCKLLTVGTLVSHFRSLVPLLELFHTRIMNKLAKRLVNAAGILNPKKISYKFCQVTISINI
Length1718
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.08
Grand average of hydropathy-0.003
Instability index47.79
Isoelectric point7.47
Molecular weight193166.05
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23187
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.50|      56|     181|    1460|    1521|       1
---------------------------------------------------------------------------
 1460- 1521 (83.59/78.85)	IVALLHAFFCNLpqeWLEGThlIIKHLRPVTSVAVLrISFRIMGPLLPRLVNAHTLFS.KTVS
 1650- 1706 (89.92/62.90)	IASCLKETSCKL...LTVGT..LVSHFRSLVPLLEL.FHTRIMNKLAKRLVNAAGILNpKKIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.04|      68|     181|     321|     458|       2
---------------------------------------------------------------------------
  287-  391 (84.77/170.05)	WDQKL....HGIDELDSTKYWKpdKA.....................................likwlhscldviWLLVeNDkcriPFYELLRSG.LQFLENIpdDEALFTLileihrrrdmmamhmQMLDQHLhCPTFGTPRLLPQ
  435-  556 (94.27/56.80)	WERALrclkHALRNAPSPDWWR..RVllvapchrvhaqaptpgavftsemvceavierivellkltnseincwqeWLIF.SD....IFFFLMKSGcVDFVEFV..DKLVFRL...............QEGDQQI.LRTNHVTWLLAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.41|      68|     181|     976|    1059|       3
---------------------------------------------------------------------------
  829-  919 (99.11/56.79)	ENL.CMNLILSLRDFffvkregkGPTEFTE........TLNRITIvtlaiiiktrgigEFEQLLYLQ.TMLEQILATSQHTWSEKTLRyfPSILRDALSGR
  982- 1059 (107.30/87.14)	ENInCTNLGRVLREF........SPEEVTAniytmvdvLLHHIHL.............ELQRGHPLQdLMLKACGNLSVFIWNHELLP..PDILLLALIDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.35|      55|     361|     920|     981|       6
---------------------------------------------------------------------------
  920-  981 (88.62/74.25)	MDKRGLAIQawQQAETTVINQCTQLLSPSADPSYVVTYINHSFPQHRQYlCAGawilMHGHP
 1284- 1338 (93.73/57.05)	MQDPGISTQ..LTLETAVIELLSLPVSPSQIVSSLVQIVVHIQPTLVQS.SNG....LHGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.82|      25|     966|     562|     610|      12
---------------------------------------------------------------------------
  584-  610 (40.53/61.73)	HKEEKSSDPNNpqSILLDFISSCQNLR
 1558- 1582 (43.29/16.02)	HYEVASSKPRS..EILALFGRAAENLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23187 with Med23 domain of Kingdom Viridiplantae
Unable to open file!