<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23185

Description Uncharacterized protein
SequenceMKVDGDSPPSAAAAAMVNVAVAVKSGEGRGSQRAVRWAIEKLLPKAHRFFLIHVMPTVIAVPTPSGENTPVNELDDNVVEMYIEDMRANCEEIFIPFKNLCTRKSVETVVLEGDNPATVLLKYVAQAGINSLVLGSFSPSYFGRKQKDGDVPSAILKHVPESFDVYVVSSNGLVKNSLNPLLSTETELNTINQQESIASCASMDFHSRASSLADFTHLNPPAFLHVNTSNHISPQQRYIHNLEESAAVLEAVKSSHSSTYSEHSDIQVEMGRLQLELQNTITLYNQTCEHLIHAQNKVQLLSSKFCEESRRVNAAKEREESLRKIVAELKKKHVETEKEVEIARKLLAEEACERQIAESKALQQSLEKQKVVDTLLSCDGRYRRLTREEIQVATDSFSESKIIGEGGYGIVYKGNLDHTPVAIKALHPNASLKKEEFLKEVEVLSQLHHPHIVLLLGASPGNGCLVYEYMENGSLEDHIFQGKNRPLPWFVRFQILFEVASALAFLHNSKPDPIVHRDLKPGNILLDKNYVSKIGDVGLAKIMSDIVPESVTEYRNSVLAGTFAYMDPEYLRTGTLRPKSDLYAFGIITLQLLAACHPNGLIMKFEEAIDTNSLANVLDKSFVDWPLIETEELSKMALKCCKLRCRDRPDLVTEVLPLLEKLSEFAKMHVRVLGNLRAPSQYFCPILQEVMEEPHIAADGFTYEHRAIKAWVDRHNISPVTKQILQHKMLTPNLTLHLAIQDWRSR
Length746
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.226
Instability index49.81
Isoelectric point6.13
Molecular weight83588.82
Publications
PubMed=22660326

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23185
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.39|      29|      43|     299|     329|       1
---------------------------------------------------------------------------
  299-  329 (42.53/38.48)	QLLSSKFCEesRRVNAAKEREESL..RKIVAEL
  345-  375 (41.86/30.50)	KLLAEEACE..RQIAESKALQQSLekQKVVDTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.81|      86|     443|     152|     272|       2
---------------------------------------------------------------------------
  180-  272 (130.71/137.14)	PLLSTEtELNTINQQESIASCASM.DFHSRASSLadFTHLNPPAFLHVNT.SNHISPQQRYIHNLEEsaaVLEAVK.SSHSSTYsEHSDIQVEMGR
  626-  714 (139.10/77.16)	PLIETE.ELSKMALKCCKLRCRDRpDLVTEVLPL..LEKLSEFAKMHVRVlGNLRAPSQYFCPILQE...VMEEPHiAADGFTY.EHRAIKAWVDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.48|      33|      42|      19|      51|       3
---------------------------------------------------------------------------
   19-   51 (55.39/36.86)	VAVAVKSGEGRG....SQRAVRWAIEKLLPKAHRFFL
   59-   95 (53.09/35.04)	IAVPTPSGENTPvnelDDNVVEMYIEDMRANCEEIFI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23185 with Med32 domain of Kingdom Viridiplantae
Unable to open file!