<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23179
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKIGGLHQISWFQFLPHESDVNSLVDKRVKPDKKDVATWLVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLYNPDEKIKLWLFFPGQHSSVVEKAQSAISKLRVLASGLWVAPGDSEEVAAALSQALRNCMERTLRGLSYVRYGDVFTKYRPFSQNEELFRKGQPVVEFVFAATEEAIFVHVIISAKHIRALSSGDIDKISENTSNVSVEGLPVIVSPHGMRGRLTGCCPADLVKQVYLSSGKFSASNGIVGLPCNVSQSSYQLKGHNCYVEVNLGSTAPGNNNIQESLNIQNNSSRPTMTEASAVANFVQSKIPDNCGRVLIYPPEAVLVPVVQTACARSSLKRFWLQNWIGPSLSFTSSFMHCFDFHCDAKVNSVDGSWLDANVIRSNRRYNSSSNSNSSSVSSISTSSSDSDYKTSGTGDLEADADSLMCRQSGLSSLDRSQNDNLKTGFKRSRAGISESFSQGGAVINPSTSDYASMDANNSAITEGSDQIGLQWGWDDDDRNAGMDIQALLSEFGDFGDFFENDALPFGELPILKPPGTAEAQALMFPAADSVDVSSSPCPSMMDVQDQILLPVGFSSFDSFNQPPPPAILDDSLSKHQEVIKSAAVTNQVNSASASIADEFNHLIKAEALMSFAPEYGAVETPTGESSHSIFRNPYVPKSREVETANSSSNSYFYSATPPLSPCFDACEEKSSVTVNLKTGTGRHDTSSIVQSKKYYTHIESGKEKNDDKVSVYVRSCATRETQVAESPFSGFNSTNSVKYIHNKTDKASEGLLKAGSSGQSIKPVLATEVECLMCQAFMCKIRHTLLSSSGCLPVGMSRMSGSTNRNQSQGEAVVTVDNMSSKSEMKKEIIPVRIAGDIDGGLLDGTLNAPVGVWRTVGVSKGTKQPTTGLESCHSVQHNSFIEDSMLAYGLRQPLQELLDGMALLVQQATSFVDVALDADNNDGSYGWLALQEQWRRGFSCRPSMVHAGCGGVLASCHSLDIAGVELIDPLSADVQASFTLTLLQNDIKAALKSAFSTMEGPLSVVDWCKGRSQSNDGGISGDGFSAESTASASECRDSSSTISLSVGEPISPSQSSAGGSSSLRDGIRVDEASERRLSQDTCLSESEQLPGSRLRATLAAVPYPAILVGYQDDWLKTSPSSLQFWEKAPFEPYAMPKHMTYHVVCPDINALTTAATDFFQQLGTVNVETCKLGTHSPQFMGNEMEIDSGKNASSGFVLIDCPQSMKIDSSSASMLGSISDYFLSLSNGWDLESYLKSLSKVLRNLKLSSCMTMNPKEGSTGPCTVVYVVCPFPEPLAVLQTVIESSIAVGSGVLSSDKERRSTLHNQVGKALSYSAAVDEALSNVLTLSGFCIPKLVLQIVTVDAIFRVTSPALSELVILKEIAFTVYNKARRISRGSPSDMVQSSSMPGRSHPVLMQMNSPVPGMWKDCVGPRGIGTSLQREADLDANLRPGSWDNWQASRGGGLGCEPNRIGDFSFQDEIRYLFEPLYILAEPGSLDRGLSFPMSGNPMTESSKLLLDDGTSGSFMQSSASSGGGDTGLNTQSETSVPDGFGSAHQKSLPSLHCCYGWTEDWRWLVCIWTDSRGELLDNHIYPFGGISSRQDTKGLQSLFVQILQQGCQILQSCPPEAAIAKPRDFVIARIGCFLELECQEWQKALYSIGGSEVKKWSLQLRRSVPDGMTASSNGTSLQQQEIGGLGQPSTRKQLIGGQGVVDNSRGLLQLVQSISFVSLSIDHSLQLMIQADSTSHGTSQSSGIMSQPGYLEGYTPVKSLGSTSTSYILIPSPSMRFLPPVSLQLPTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPTMRRDVRSISKEEWPSVLSVSLVDYYGGSNVIHEKFLKGVGKVGGRGTGSETRDVEIAAHLILENIAAELHALSWMTVSPAYLERRSALPLHCDMVLRLRRLLHFADKEVSRQPVKSQV |
Length | 1966 |
Position | Kinase |
Organism | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum>
Solanum subgen. Lycopersicon.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.203 |
Instability index | 53.45 |
Isoelectric point | 5.50 |
Molecular weight | 212508.00 |
Publications | PubMed=22660326
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP23179
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 290.26| 78| 538| 1209| 1303| 1
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1209- 1289 (129.32/77.81) HSPQFMGNEMEIDSGKNASSGFVLIDCPQSMKIDSSS......ASMLG.SISDYFLSLSNGWDlESYLKSLSKVlrNLKLSSCMTM.NP
1750- 1821 (115.15/59.57) HSLQLMIQADSTSHGTSQSSG..IMSQPGYLE.GYTP......VKSLG.STSTSYILIPS.....PSMRFLPPV..SLQLPTCLTAeSP
1837- 1890 (45.79/33.55) ..................STGFVVSKAVPTMRRDVRSiskeewPSVLSvSLVDYY.GGSNVIH.EKFLKGVGKV...............
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 511.76| 147| 1007| 391| 539| 2
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391- 539 (245.89/143.97) VIRSNRRYNSSSNSNSSSVSSISTSSSDS.DYKTSGTG.DLEADADSLMCRQSGlSSLDRSQNDNLKTGFKRSRAGISESFsQGGAVINPSTS.......................................................................................................................................................................................................................................DYASMDANNSAITEGS.DQIGLQWGWDDDDRNAGMDIQALLSEFGDFGDFFEN..DALPFG
678- 715 (25.38/ 6.05) ........NSSSNS.................YFYSATP.PLSPCFDA..CEEK..SSV....TVNLKTGTGR.........................................................................................................................................................................................................................................................................................................................
947- 996 (41.81/15.55) .............................................................................................hdtssivqskkyythiesgkeknddkvsvyvrscatretqvaespfsgfnstnsvkyihnktdkasegllkagssgqsikpvlateveclmcqafmckirhtllsssgclpvgmsrmsgstnrnqsqgeavvtvdnmssksemkkeiipvriagdidgglldgtlnapvgvwrtvgvskgtkqpttgleschsvqhnsfiedsmlayglrqplqelldgmallvqqatsfvDVA.LDADNN...DGSyGWLALQEQW....RR.GFSCRPSMVHAGCGGVLASC..HSLDIA
1020- 1158 (198.67/108.92) DIKAALKSAFSTMEGPLSVVDWCKGRSQSnDGGISGDGfSAESTASASECRDSS.STISLSVGEPISP..SQSSAGGSSSL.RDGIRVDEASE.......................................................................................................................................................................................................................................RRLSQD...TCLSE.S.EQLP...GSRLRATLAAVPYPAILVGYQD..DWLKTspSSLQF.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.06| 23| 39| 210| 233| 3
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210- 233 (38.34/23.22) SNvSVEGLPVIVSPHGMRGRLTGC
252- 274 (43.72/22.86) SN.GIVGLPCNVSQSSYQLKGHNC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 119.40| 36| 539| 783| 826| 4
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107- 144 (55.72/25.07) LRVLASGLWVAPGDSEEVAAALSQALRNCMERTLrgLS
785- 820 (63.68/52.31) LKAGSSGQSIKPVLATEVECLMCQAFMCKIRHTL..LS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 133.06| 33| 125| 1539| 1575| 5
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1418- 1457 (38.71/12.61) QSSSMPGRSH.PVL.MQMNSPVPgmwkDcvgprGI.GTSLQRE.
1543- 1575 (58.69/33.42) QSSASSGGGD.TGLNTQSETSVP....D.....GF.GSAHQKSL
1674- 1704 (35.66/13.19) ....SIGGSEvKKWSLQLRRSVP....D.....GMtASSNGTSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 210.81| 64| 1309| 287| 356| 7
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287- 356 (98.65/86.79) NNNIQESLNIqnnSSRPTMTEASAVanFVQsKIPDNCGRVLIYPPEAVLVPVVQTACAR.SSLKRFWLQNW
1604- 1668 (112.16/77.81) DNHIYPFGGI...SSRQDTKGLQSL..FVQ.ILQQGCQILQSCPPEAAIAKPRDFVIARiGCFLELECQEW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.38| 28| 1008| 541| 568| 8
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541- 568 (47.41/27.70) L..PILKPPGTAEAQALMFPAADSV.DVSSS
576- 606 (40.98/22.82) VqdQILLPVGFSSFDSFNQPPPPAIlDDSLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 139.45| 40| 830| 57| 98| 9
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57- 98 (71.71/48.94) GFLSTWTNSFVGPWDP...SQGLYNPDEKIKlwLFFPGQHSSVVE
874- 916 (67.74/39.17) GLLDGTLNAPVGVWRTvgvSKGTKQPTTGLE..SCHSVQHNSFIE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.73| 15| 122| 1165| 1180| 10
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1165- 1180 (28.03/25.21) EPYAMPKHMTYhVVCP
1291- 1305 (30.70/21.15) EGSTGPCTVVY.VVCP
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