<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23177

Description Uncharacterized protein
SequenceMETVTVRSSQWDRVTELTKLAQERNTDPLVWAMELSSSLNSAGISMPSTDVAELLVSHICWSNNVPNAWKLLEKALVFRIVPPLFVLALLSTRVIPARRSYPMAYRLYMELLKRYAFSLPSLINGPNYQKIMESINDTLHLSQIFELQGSESGMHVIEYVFAVVCQLLDASLDDEGLLELTAEKKSRWPVATQEMEISNRDGFAGKRVEHREGLCRMNTVQAIEIIGELFGDKLTSMILYLARRNMPTHWDSFMQHLHLLVSNSSALRNSKKISLETLVLLISKNRGVLSRECKTSSRKFLHAVMASGSFALSASRCDDASTSVLWLPIDLFLEDTMDGSKVAATSAADTLTGLVKALRAVNCTSWKNTFFGLWISALRLVNRERDPSEGPVPRLDTCLCLLLSITPLAITNIIKEEENASSTSDQRTEATGKHRQALVSSLQQLHDYEGLLTPPLPAIPLANQAALKAMMFLSGISEGSEYFDGLRLNDMPVNCAGSLWHLIVEACIARNILDTSAYLWPGYVKGQCNQVPRNMSAPSPSWSSLMKGSPLTPPMVSVLVSTPASSLAEIEKIYEIAVNGPAEDKISAATILCGASLARGWNIQEHTVLFITWLLSPSVPSDYSGSDSHLISYAPFLNVLIVGISSVDCIQILSLHGLVPQLVGALMPICEAFGSCPPNVSWTLMSEEITSHAVFSNAFTLLLTLWRFDQPPLEHVTRDVPVGSHLTPEYLLLVRNSQLAFSEDLLKDQSKSKQLSRVLSQLPREPIFMDSFPKLKCWYRQHQACIASPLSGLVPGTPVHQIVEALLNFMFRKINSAGQSLIPPTSSGSNSSGSGNEEISPHLKLPAWDILEAVPFVLNAALTACAHGTLSPRELATGLKHLADFLPASLATITSYFSAEVTRGIWKPASMNGTDWPSPAANLATVEQQVKKILADTGVDVPSLSVGGSSPAILPLPLAVLVSLTITYKLDRDTDRFLNLMGAAVSNLATSCPWPCMPVMAALWAQKVRRWSDFLVFSASRTVFHHSSDAVVQLLRVCFTATLGLGRSSIESNGGVGSLLGHGFGSHFSGGISAVAPGILYLRVHRAVRNVMFMSEEIVSLLMHFVRDIADSGVPAKDLEKLKKTRGDIRSLSSQKTDIGFPASCHVSLAAAMVRVKLAASLGASLVWITGGLSLVQSLLKETLPSWFISAHRSEPNGGVSEGMVARLRGYALAYLAVLCGTFCWGVDSSSPTSKWRPSMLGAHLEFLASALDGKISLGCNKATWRAYVSGFVSLIVGCTPSWLLEVDLQVLKRLSKGLKRCDEEVLALALLEASGVGAMGTAAQMIIEGSLNFAR
Length1336
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy0.167
Instability index46.72
Isoelectric point6.89
Molecular weight145365.51
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23177
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     496.16|     141|     175|     980|    1127|       1
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  354-  442 (67.04/29.49)	..........................LVKALRAVNCTSWKNtFFGLwiSALR..LvnreRDP.SEGPVPRLD...TCLCLLL.SITPLAItniikeeENASSTSDQRTEATGKHRQALVSSL.....................................................
  980- 1127 (225.88/137.07)	LMGAAV.....SNLATSCPWPC..MPVMAALWAQKVRRWSD.FLVF..SASRTVF....HHS.SDAVVQLLR...VCFTATL.GLGRSSI.......ESNGGVGSLLGHGFGSHFSGGISAVaPGILYLRVHRAVRNVMfmseeiVSLLMHFVRDIADSGVPAKDLEKLKK.TRG
 1149- 1298 (203.24/109.82)	LAAAMVrvklaASLGASLVWITggLSLVQSLLKETLPSW...FI....SAHRSEP....NGGvSEGMVARLRgyaLAYLAVLcGTFCWGV.......DSSSPTSKWRPSMLGAHLEFLASAL.DGKISLGCNKATWRAY......VSGFVSLIVGCTPSWLLEVDLQVLKRlSKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     357.55|      78|     174|     491|     568|       2
---------------------------------------------------------------------------
  460-  558 (124.26/59.87)	PLANQA.ALK.........ammflsgisegseyfdglrlndMP.VNCAGSL.......WHLIVEACIAR.......NILDTSAYLWP......G.....YVKGQCNQVP.RNMSAPS....PSWSSLMKGSP..LT..PPM.VSV
  559-  639 (64.66/27.86)	LVSTPASSLA...........eiekiyeiavngpaedkisaAT.ILCGASL....argWN.IQE....H.......TVLFITWLL...............................S....PSVPSDYSGSDshLIsyAPF.LNV
  658-  732 (83.23/37.83)	LVPQLVGAL................................MP.I.CEAFGscppnvsWTLMSEEITSHavfsnafTLLLTLW....................RFDQPPlEHVTRDV....PV......GSH..LT..PEY.L.L
  733-  832 (57.54/24.03)	LVRN..SQLAfsedllkdqskskqlsrvlsqlprepifmdsFPkLKC...........WYRQHQACIAS.......PL....SGLVP......GtpvhqIVEALLNFMF.RKINSAGqsliPPTSSGSNSS..............
  916-  960 (27.86/ 8.09)	.....................................................................................WPspaanlA.....TVEQQVKKIL.ADTGVDV....PSLSVG.GSSP..AI..LPLpLAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     282.00|      90|     142|      80|     174|       3
---------------------------------------------------------------------------
   80-  174 (143.45/125.10)	IVPPLFVLALLSTRVIPARRSYPMAYRLYMELLKRYAFSLPSLINGpnyQKI.MESIndTLHLSQ...IFELQGSESGMHVIEYVFAVVCQLLDAS.LDD
  225-  319 (138.55/103.90)	IIGELFGDKLTSMILYLARRNMPTHWDSFMQHLHLLVSNSSALRNS...KKIsLETL..VLLISKnrgVLSRECKTSSRKFLHAVMASGSFALSASrCDD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23177 with Med33 domain of Kingdom Viridiplantae
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