<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23176

Description Uncharacterized protein
SequenceMDPDSKKFGRGPRELAGAVDLINHYKLLPHHEYFCKKPLPLSISDTRYLHNVVGDREIRKGEGMQLDQLIHDTSFLKETNSRIQPFELDALNEAFQLREAAPIVLPPSEKGIPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKEKKKDKTGRHDSGADLSKKHHEKRKKHEGKEDLNDVNKHKRNKHTS
Length206
PositionHead
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.04
Grand average of hydropathy-1.568
Instability index31.32
Isoelectric point9.67
Molecular weight23980.90
Publications
PubMed=22660326

Function

Annotated function 
ECO:0000256
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP23176
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.52|      15|      15|     124|     138|       1
---------------------------------------------------------------------------
  124-  138 (29.67/10.70)	KDKEKKHKKHKDKDK
  158-  172 (23.85/ 7.20)	KDKEKKKDKTGRHDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.35|      17|      31|     141|     157|       2
---------------------------------------------------------------------------
  141-  157 (31.81/12.51)	DKEHKKHKHRHKDRSKD
  175-  191 (28.54/10.49)	DLSKKHHEKRKKHEGKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23176 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LREAAPIVLPPSEKGIPTVAGKSKSESKDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKEKKKDKTGRHDSGADLSKKHHEKRKKHEGKEDLNDVNKHKRNKHTS
97
206










Molecular Recognition Features






MoRF SequenceStartStop




1) KDKEKKHKKHKDKDKEKDKEHKKHKHRHKDRSKDKDKEKKKDKTGRHDSGADLSKKHHEKRKKHEGKEDLNDVNK
124
198