<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23175

Description Uncharacterized protein
SequenceMDGNNWRAAQAQAPGGGEGGGAAAGAMESGDWRTQLMPDSRQRIVNKIMETLKRHLPVSGQEGVQELKKIAVRFEEKIYSAATSQQDYLRKISLKMLTMETKSQPPMTNSVQPNPASSGQNALGPGSHSMQSQVNSQAQQLPVPMVANQTQTRQPLLQQNLQNNMASTGLQNSASLAPSLPSVSNLTQGTMPNVVGQNSNLQTMQNMPNVGQNLVGNAIGQGMPPNMVANSQRQMQGRQQQVVSQQQQQQSQTTQQYMYQQQLHQHQMMKQKFQPGSTSQSLMQSHMQQQQQPQEQQQQLPQQQQNLLQPTQTQPSQQAMMQPSSIQSTSLSNLQQSQQSTVQQSTQSTNVANLQQNQLMSQQNAMPDVQQRLVGQQNNYMHQQNNFQNMHQQQLGSQSSIAGVQQQQLSGSQQPGNSGLTSNQHPIHLMQQPKVPVQQQMLQSTTTLLPNQGQQSQSQPAQQQMMSQSQSQPGQLQPPLGLQQQANQLQREMQQRLQPSAPLLQQQNVMEQQKQLYQSQRVAPEASSTILLAMYGAACLPVLKRCHDSLPQRPQNEQIEKLKMFKITLERIVLFLRLNKQDIQLSHKEKLASVEKHISFFLSSNRPRSKPSSSPLQGQLPQSSMQLQQPPSLDGQSNPSMQPSQGSMAAMPQNNLTNLQHNTLSGVPTISNSQQHMINTVQPGSTVDLGQGNSLNSLQQVATGSLQQNPVNSPQQVNMSSLSSQSGTNPVQANLGSLQQNSNALQQSLPKQHEQQMLQNQQLRQQYHHRHMQQQLFQRQQIIQQQQAKQQQTTLLPTHQMSQLQQMTDANDLKIRQQMGIKPGVLQQQSVGQRVGSHHPQLKPGISSPQLHQALSPQVTQHPSPQIDQQNMLASLTKAGTPLQSASSPFVVPSPSTPLAPSPMPGDSEKVGAGLGSHTTAGNIMHQQATVASAPAQSLAIGTPGISASPLLAEFTPLDGTHANVSAAVPGRSSVEQPLDRLMRAVKNMSDKALQSSVQDIYSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNYFTQDGPTGTKKMKRYTTSNVVSSSSSLNDSFWQVNYSETPELESTATSNAKRPKIEVNIALVEEIQKINRQLIDTVVEISDEGVDPSALAAATEGGEGTTVKCSFTAVALSPNLKALYASAQMSPIQPLRLLVPVNYPNCCPILLDKFPVEVSKEYEDLSTKAKSRFSVSLRSLSQPMSLKDIVKTWDVCARAVICEYAQQSGGGTFSSKYGSWENCSTAA
Length1262
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.03
Grand average of hydropathy-0.687
Instability index75.24
Isoelectric point9.39
Molecular weight138012.47
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23175
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     212.12|      39|      39|     127|     165|       1
---------------------------------------------------------------------------
  127-  165 (69.72/16.19)	SHSMQSQVNSQAQQLPVPMVANQTQTRQPLLQQNLQNNM
  285-  316 (53.63/10.64)	SH.MQQQQQPQEQQQQLP......QQQQNLLQPTQTQPS
  317-  350 (43.20/ 7.04)	QQAMMQPSSIQSTSL.....SNLQQSQQSTVQQSTQSTN
  451-  481 (45.57/ 7.86)	NQGQQSQSQPAQQQM...MSQSQSQPGQ..LQPPLG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     201.34|      44|      45|     875|     918|       2
---------------------------------------------------------------------------
  390-  429 (56.98/13.64)	MHQQ...QLGSQS..SIAGVQQ..QQLSGSQQPGNSGLTSNQHPIH.....L
  698-  737 (42.07/ 8.01)	LQQVATgSLQQNPvnSPQQV.NMS...SLSSQSGTNP.VQANLG.......S
  785-  823 (44.89/ 9.08)	.QQQAK.QQQTTL..LPTHQMSQLQQMT....DANDLKIRQQMGIK.....P
  876-  924 (57.40/13.80)	LTKAGT.PLQSAS..SPFVVPSPSTPLAPSPMPGDSEKVGAGLGSHttagnI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     173.89|      36|     120|     228|     265|       6
---------------------------------------------------------------------------
  228-  254 (38.85/ 9.77)	...........VANSQRQ........................................MQGRQQQVVSQQQQQQSQTT
  255-  279 (36.60/13.70)	QQYMYQQQlhQ....................................................HQMMKQKFQPGS.TS
  351-  377 (35.66/ 8.19)	...........VANLQQN........................................QLMSQQNAMPDVQQRLVGQQ
  378-  447 (30.49/ 6.02)	NNYMHQQN..NFQN....mhqqqlgsqssiagvqqqqlsgsqqpgnsgltsnqhpihlMQ..QPKVPVQQQMLQSTTT
  487-  512 (32.30/ 6.52)	............NQLQRE........................................MQQRLQPSAPLLQQQNVMEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.17|      11|      16|     840|     851|       7
---------------------------------------------------------------------------
  840-  851 (16.84/ 9.85)	PQLKPGiSSPQL
  857-  867 (22.33/ 9.43)	PQVTQH.PSPQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.77|      15|      16|    1166|    1180|      10
---------------------------------------------------------------------------
 1166- 1180 (28.00/16.39)	PIQPLRLLVPV..NYPN
 1183- 1199 (21.76/11.22)	PILLDKFPVEVskEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.57|      12|      16|      37|      48|      11
---------------------------------------------------------------------------
   37-   48 (22.32/14.62)	MPDSRQRIVN...KI
   56-   70 (16.25/ 8.27)	LPVSGQEGVQelkKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.85|      12|      25|     604|     615|      14
---------------------------------------------------------------------------
  604-  615 (22.74/ 9.99)	SNRPRSKPSSSP
  632-  643 (23.11/10.29)	SLDGQSNPSMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.49|      40|     109|     999|    1038|      16
---------------------------------------------------------------------------
  999- 1038 (66.78/52.67)	QDIY.SVVSMND...........RIAGSAPGNGSRAAVGEDLVAMTKCRLQA
 1059- 1104 (28.46/17.52)	SNVVsSSSSLNDsfwqvnysetpELESTATSNAKRPKI.EVNIALVE.....
 1112- 1148 (56.26/43.01)	QLID.TVVEISD...........E..GVDPSALAAATEGGEGTTV.KCSFTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.65|      21|      25|     555|     576|      20
---------------------------------------------------------------------------
  555-  576 (30.07/35.95)	QNEQI.EKLKMFKITlERIVLFL
  581-  602 (30.58/29.12)	QDIQLsHKEKLASVE.KHISFFL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23175 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSSNRPRSKPSSSPLQGQLPQSSMQLQQPPSLDGQSNPSMQPSQGSMAAMPQNNLTNLQHNTLSGVPTISNSQQHMINTVQPGSTVDLGQGNSLNSLQQVATGSLQQNPVNSPQQVNMSSLSSQSGTNPVQANLGSLQQNSNALQQSLPKQHEQQMLQNQQLRQQYHHRHMQQQLFQRQQII
2) MDGNNWRAAQAQAPGGGEGGGAAAGAMESGDWRTQLMPDSRQRIVNKIMETLKRHLPVSGQEGVQEL
3) QAKQQQTTLLPTHQMSQLQQMTDANDLKIRQQMGIKPGVLQQQSVGQRVGSHHPQLKPGISSPQLHQALSPQVTQHPSPQIDQQNMLASLTKAGTPLQSASSPFVVPSPSTPLAPSPMPGDSEKVGAGLGSHTTAGNIMHQQATVASAPAQSLA
4) RKISLKMLTMETKSQPPMTNSVQPNPASSGQNALGPGSHSMQSQVNSQAQQLPVPMVANQTQTRQPLLQQNLQNNMASTGLQNSASLAPSLPSVSNLTQGTMPNVVGQNSNLQTMQNMPNVGQNLVGNAIGQGMPPNMVANSQRQMQGRQQQVVSQQQQQQS
5) TTQQYMYQQQLHQHQMMKQKFQPGSTSQSLMQSHMQQQQQPQEQQQQLPQQQQNLLQPTQTQPSQQAMMQPSSIQSTSLSNLQQSQQSTVQQSTQSTNVANLQQNQLMSQQNAMPDVQQRLVGQQNNYMHQQNNFQNMHQQQLGSQSSIAGVQQQQLSGSQQPGNSGLTSNQHPIHLMQQPKVPVQQQMLQSTTTLLPNQGQQSQSQPAQQQMMSQSQSQPGQLQPPLGLQQQANQLQREMQQRLQPSAPLLQ
602
1
787
90
253
783
67
940
251
505










Molecular Recognition Features






MoRF SequenceStartStop




NANANA