<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23174

Description Uncharacterized protein
SequenceMLGGNTRLRLENEKIEKLEMYKIMLERIMLFLRLNKQEIQLIHKDKLVSIEKNIIKFLSYNLARSKTSSPQQGQLHQSSMQLQTNPPMQPVQGSVEAMQQSYLSDLHRYSLSGVSTISNSQQHMIDVVKPGSRSDLGQGNSLNSPQQVDTGSLQQNPVNSLQHDNISSFSAQGGMNPVPANLKFLQKNSNALPEQQMLQNQQLTPLCNQLLMEQQLFQSQQLMKHQQAMNSPPQNDFTNLHHDSLSGVSTNSNSQQDMINTIQPGSNLDFGQGNSLNSLQ
Length280
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.04
Grand average of hydropathy-0.667
Instability index57.93
Isoelectric point7.10
Molecular weight31409.07
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23174
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     333.83|      75|     132|      70|     146|       1
---------------------------------------------------------------------------
   70-  146 (132.73/58.54)	PQQ...GQLHQSSmQL.QTNPPMQPvQGSVEAMQQSYLSDLHRYSLSGVSTISNSQQHMIDVVKPGSRSDLGQGNSLNSPQ
  147-  194 (66.72/23.59)	..QvdtGSLQQ........NP................VNSLQHDNISSFS....AQGGMNPV..PANLKFL.QKNSNALPE
  205-  280 (134.39/53.69)	PLC...NQLLMEQ.QLfQSQQLMKH.QQAMNSPPQNDFTNLHHDSLSGVSTNSNSQQDMINTIQPGSNLDFGQGNSLNSLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.27|      23|      23|       9|      31|       2
---------------------------------------------------------------------------
    9-   31 (38.17/31.11)	RLENEKIEKLEMYKIM.LER.IMLF
   33-   57 (28.10/21.09)	RLNKQEIQLIHKDKLVsIEKnIIKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23174 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KTSSPQQGQLHQSSMQLQTNPPMQPVQGSVEA
2) QHMIDVVKPGSRSDLGQGNSLNSPQQVDTGSLQQNPVNSLQHDNISSFSAQGGM
3) QSQQLMKHQQAMNSPPQNDFTNLHHDSLSGVSTNSNSQQDMINTIQPGSNLDFGQGNSLN
66
122
218
97
175
277










Molecular Recognition Features






MoRF SequenceStartStop




NANANA