<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23172

Description Uncharacterized protein
SequenceMIHRGRNLSASISETAPTFCTVYAVSKGKLSSVRASSTENNRFLIDDNSDTSSSSNNSTSHSFSSQGERTDHSSTSPASYSHMYSPSHQLQRYQSKSPVHQALQTLLHKRTNFSENIQSRSSSVDIGEAFQALSIKTNTPFHKRAILDEVIHPRALSVAIGEADDEKSCYFSSSGITDLYNRASSFKKAKVDNQSWSTNFVYVQVNINYDLEKLRIELRHIQGMYAIAQTEAIDASRKLNEFQKLRVEEANKLKQINLKEEEAKELAEQEKLKCEAAKKEADYAMECVEREAEQRRAAESIANREARMKEKLEKSLALPLHHYQEFTWEEIVTASSSFSEDLKIGMGSYGMVYKCYLHHTPAAVKVLHSAEAHITKQFQQELEVLSKIHHPHLLFLLGACPERGCLVYEYMENGSLEDRLTRKNNTPPLTWFDRVRIAWEVASALVFLHNTKPKPIIHRDLKPANILLDHNLVSKIGDVGLSTMVQSDSSSAMTAYKDTSPVGTLCYIDPEYQRTGLVSTKSDVYAFGMVILQLLTSKRAIALAHMVEMATEEDKLVELLDQEAGEWPLEETKELAVLALKCTELRRRDRPDLKDEVLPILERFKEVADRARHLKCNLPPPPSHFKCPLLKEVIQDPCVAADGYTYDRKAIESWLADNDHSPVTNLPLPHKHLLPNYALLSAIKEWKSGKH
Length691
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.494
Instability index48.07
Isoelectric point6.50
Molecular weight78152.67
Publications
PubMed=22660326

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23172
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.63|      18|      24|      41|      64|       1
---------------------------------------------------------------------------
   41-   64 (26.44/28.08)	NRfliddnSDTSSSSNNSTSHSFS
   68-   85 (35.20/20.85)	ER......TDHSSTSPASYSHMYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.62|      27|      29|     237|     265|       2
---------------------------------------------------------------------------
  237-  265 (36.43/24.95)	RklNEFQKLRVEEANKLKQINLK..EEEAKE
  267-  294 (29.91/14.32)	...AEQEKLKCEAAKKEADYAMEcvEREAEQ
  295-  314 (21.28/ 8.85)	R........RAAESIANREARMK..EKLEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.53|      18|      20|     575|     594|       4
---------------------------------------------------------------------------
  576-  594 (25.70/29.02)	AVLAL..KCTELRRRDRpDLK
  596-  615 (25.83/14.98)	EVLPIleRFKEVADRAR.HLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.57|      22|      25|      89|     112|       8
---------------------------------------------------------------------------
   89-  110 (38.73/28.77)	QLQRYQSKSPVHQALQTL.......LHKR
  116-  144 (30.84/15.05)	NIQSRSSSVDIGEAFQALsiktntpFHKR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23172 with Med32 domain of Kingdom Viridiplantae
Unable to open file!