<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23161

Description Uncharacterized protein
SequenceMASPAWLPQETQSSSSQTSVMSSATGEPTTSSSTPNADSTQEAAQGKFISPPGYSVCRASFSYMNANVPSGSSQQSSSSPVIPSTSAGSSASLQPPIPGQSANVGSSFSYNISQTDNNFSSGLQFSSSTLRPAAPDHSVDINASPAASLQPPLPLVSTRLSSFMPGTAASAGPLISGSNLSFNGGPQMMQTDQTMKPNRRVDLAQETGGMTSATLVMHSVSQAVHMSSGSSTAAFPTSHMGSPNIIRMPHAPQFQVPAGVPRSPVTPGPPGLGPAIPSSSNLTATVSPGGPSLPLRPNAPPVHVLANPSVQQQTYSPYHSPAPIAPSHQGPWLQPPPVTTMLRPPFPSYPAGFAVPYPLSATGAPLSSVTLPDTRPPGVAPVAAPPGVPTTASQSTHASGLQPELPPGVDSGKHVNDADTKQGASTSEQLETWTAHRTETGAIYYYNSLTGESTYEKPAGFRGEPGKVAAQPTPVSWERLAGTDWALVATNDGQKYYYNTKTKLSSWQIPIEVTELKKKHDADALQAQSPSILNVNESAEKGSAPISLSIPAVSTGGRDATSLRPSLVPGSSALDLVKKKLMDFGTPLAVSSPAPASSGVISSEVNGSKALESTTRIPQKENSKEKSKEANDNGNLSESSSDSEDDESVPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKTLFEHYVKTRADEERKEKRAAQKAAVEGFKQLLEEAKEDISEDTDYQSFKKKWSHDPRFESLDRKEREVLLNERVLQLRKAAQEKAHAVRAAVISQFKSMLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFREHVKVLYERCVQEFKVLLAEVITVEACSRETEDGKTVANSWSTAKQVLKGDLRYSKMARKDSETLWRRYVEDIHRRQKSTLDEADKARSKGSSDSRRR
Length1040
PositionUnknown
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.06
Grand average of hydropathy-0.682
Instability index58.34
Isoelectric point8.63
Molecular weight113053.94
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23161
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     397.14|      53|      54|      46|      98|       1
---------------------------------------------------------------------------
    2-   50 (42.86/13.45)	.........ASPAW....LPQETQSSSSQTSvmSSA..TGEPTTS....SSTP.NadS.TQ..EAAQ...............GKF..IS
   51-  100 (87.59/35.17)	PPGYSV.CRASFSY....MNANVPSGSSQQS..SSS..PVIPSTS....AGSS.A..S.LQ..PPIP...............GQ.....
  101-  154 (32.88/ 8.61)	....SAnVGSSFSYnisqTDNNFSSG.LQFS..SSTlrPAAPDHSvdinASPA.A..S.LQ..PPLP......................
  156-  195 (32.88/ 8.60)	.....V.STRLSSF....M....P.GTA..A..SAG..PLI........SGSN.L..S.FNggPQMM..............qTDQ..TM
  196-  241 (56.39/20.02)	KPNR....RVDLAQ....ETGGMTSATLVMH..SVS..QAV.HMS....SGSS.T..A......AFP...............TSH..MG
  269-  306 (47.78/15.84)	PPG...............LGPAIPSSSNLTA..TVS..PGGPSLP....LRPN.A........PPV...................hvLA
  307-  367 (57.35/20.49)	NP..SV.QQQTYSP....YHSPAPIAPSHQG..PWL..QPPPVTT....M.........LR..PPFPsypagfavpyplsatGAP..LS
  376-  409 (39.40/11.77)	PPGVAP.VAAP...........................PGVPTTA....SQSThA..SgLQ..PELP..............pG.....V
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     343.96|      75|      99|     760|     834|       2
---------------------------------------------------------------------------
  656-  720 (62.28/34.42)	.........IIQFKEMLKERG..VAP.....FSKWEKELPKIVFDPRFKAIpS.YSARKTL...............fehyvktradeER.KEK............RAAQK
  749-  781 (38.96/18.80)	.................................KWSH.......DPRFES....................................lDR.KEREVLLNERVLQLRKAAQE
  782-  878 (93.95/55.62)	KAHAVRAAVISQFKSMLREQGD.ITL.....NTRWSKVKDSLRSDPRYKSV.K.HEDRETLfneylselkaaeqevariakakhdeeDKlKER.....ERALRKRKEREE
  885-  954 (84.02/48.97)	RSKARRKEAVESYQALLVE.......iikdpQASWTESKPKLEKDPQGRAA.NpHLDQSDL................................EKLFREHVKVLYERCVQ
  955- 1023 (64.75/36.07)	EFKVLLAEVIT.VEACSRETEDgKTV.....ANSWSTAKQVLKGDLRYSKM.A.RKDSETL..................wrryvediHR.RQKSTL..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.88|      33|      34|     551|     583|       3
---------------------------------------------------------------------------
  551-  576 (36.21/21.99)	..........P.AVSTGGRDATSLRPSLVPGSSALDL
  577-  613 (42.16/27.20)	VKKKLMDfgtPlAVSSPAPASSGVISSEVNGSKALES
  617-  639 (26.50/13.50)	IPQKENS...K.EKSKEANDNGNLSES..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.98|      15|     102|     413|     427|       4
---------------------------------------------------------------------------
  413-  427 (25.98/14.67)	KHVNDADTKQGASTS
  517-  531 (23.60/12.63)	KKKHDADALQAQSPS
  533-  547 (21.40/10.74)	LNVNESAEKGSAPIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.99|      29|      49|     428|     458|       5
---------------------------------------------------------------------------
  428-  458 (48.54/34.54)	EQLetWTAHRTETGAI......YYYNSLTGESTYEKP
  459-  483 (17.83/ 6.01)	AGF......RGEPGKVaaqptpVSWERLAGT......
  485-  510 (41.62/22.90)	.....WALVATNDGQK......YYYNTKTKLSSWQIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23161 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSKALESTTRIPQKENSKEKSKEANDNGNLSESSSDSEDDESVPTK
2) HMSSGSSTAAFPTSHMGSPNIIRMPHAPQFQVPAGVPRSPVTPGPPGLGPAIPSSSNLTATVSPGGPSLPLRPNAPPVHVLANPSVQQQTYSPYHSPAPIAPSHQGPWLQPPPVTTMLRPP
3) LISGSNLSFNGGPQMMQTDQTMKPNRRVDLAQETGGMTSATLVMHSVSQA
4) MASPAWLPQETQSSSSQTSVMSSATGEPTTSSSTPNADSTQEAAQGKFI
5) NVPSGSSQQSSSSPVIPSTSAGSSASLQPPIPGQSANVGSSFSYN
6) TGAPLSSVTLPDTRPPGVAPVAAPPGVPTTASQSTHASGLQPELPPGVDSGKHVNDADTKQGASTSEQLETW
607
225
174
1
67
362
652
345
223
49
111
433










Molecular Recognition Features






MoRF SequenceStartStop




NANANA