<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23160

Description Uncharacterized protein
SequenceMLQNVPHQPLQSPARLGLPTPSSPSLQNPNTAPKFSSQVSQPHQPHQQANILTTTTTSSTLLPLLPPLSRAQSLLIQMASLASRLFEVSPNRSHWLSAFRGSLPSFLPSVAPVPQDSCPSSSKEILSVFTSLQTQLFEAVAELQEILDLQDEKQKLTREVRSKDSSILAFANKLKEAERVLDMLVDDYSDYRRPKQAKLENDTEESSVTTVATQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQLRASQLYIFADLDVGLPKTDEGKKIVEPLIEPLADTNSLANLSAIQGLVPPNIVVPSGWKPGMPVELPTDLPLPPPGWKPGDPIALPPVDSLSLASKSNGLEENAAKKVVEIETEQKSSGQESDQVMKSDPRSDVEQLQQLDKTPVINESSKSENGSMKSRKSVSWSEELVAESPAPRSMPSDDRGLNPYVAYTPAPENNSSSFNVKDTMESVKGVLGRWGKKVGEATKKAEDFAGNTWQHLKTGPSLADAALGRIAQGTKVLAEGGYDKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAFCSDNPLSYKAEDKTEWSYYKVVIPLHQLKAINSSSSRTNPSEKYVQTISVDNHEFWFMGFLNYSGAVNCLQEALQARNLHSV
Length650
PositionMiddle
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.06
Grand average of hydropathy-0.425
Instability index59.44
Isoelectric point5.39
Molecular weight71006.19
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23160
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.69|      13|      18|     312|     329|       1
---------------------------------------------------------------------------
  312-  324 (30.60/22.70)	PSGWKPGMPVELP
  331-  343 (31.09/11.47)	PPGWKPGDPIALP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.58|      19|      19|     415|     433|       2
---------------------------------------------------------------------------
  411-  429 (30.53/15.88)	NGSM.............KSRKSV..SWS.EELVAE
  430-  449 (29.78/15.32)	SPAP.............RSMPSD..DRGlNPYVAY
  450-  482 (18.27/ 6.75)	TPAPennsssfnvkdtmESVKGVlgRWG.KK.VGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.88|      11|      19|      80|      90|       3
---------------------------------------------------------------------------
   80-   90 (18.53/ 9.88)	SLASRLFEVSP
  102-  112 (19.35/10.67)	SLPSFLPSVAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.73|      26|      33|       6|      33|       4
---------------------------------------------------------------------------
    6-   33 (46.37/27.74)	PHQPLQSPARLGLPTPSSPSLqnPNTAP
   42-   67 (49.36/24.24)	PHQPHQQANILTTTTTSSTLL..PLLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.24|      12|      54|     163|     174|       5
---------------------------------------------------------------------------
  163-  174 (18.82/10.58)	KDSSILAFANKL
  204-  215 (16.73/ 8.71)	EESSVTTVATQL
  216-  227 (18.69/10.46)	KLSDILSYAHRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.90|      12|      54|     239|     250|       6
---------------------------------------------------------------------------
  239-  250 (21.40/11.39)	AGQAPLRGALPP
  277-  288 (15.75/ 6.38)	EGKKIVEPLIEP
  296-  307 (17.75/ 8.16)	ANLSAIQGLVPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.96|      17|      32|     142|     158|       8
---------------------------------------------------------------------------
  149-  182 (15.29/ 8.65)	LQDEKQKLTRevrskdssilafanklkEAERVLD
  184-  200 (27.68/22.53)	LVDDYSDYRR.................PKQAKLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23160 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EENAAKKVVEIETEQKSSGQESDQVMKSDPRSDVEQLQQLDKTPVINESSKSENGSMKSRKSVSWSEELVAESPAPRSMPSDDRGLNPYVAYTPAPENNSSSFNVKD
2) MLQNVPHQPLQSPARLGLPTPSSPSLQNPNTAPKFSSQVSQPHQPHQQANILTTTT
3) MPVELPTDLPLPPPGWKPGDPIALPPVDSLSLASKSNG
358
1
319
464
56
356










Molecular Recognition Features






MoRF SequenceStartStop




NANANA