<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23157

Description Uncharacterized protein
SequenceMEGVVAAQDQQQQQPQPPRVVEGLNPAVQQQLNLESVKTRAVSLFKAISRILEDFDAIARTNAVPKWQDILGQFSMVNLELYNIVEDIKKVSKAFVVHPKNVNAENAAILPVMLSSKLLPEMEVEDNAKREQLLHSMQHLSVASQIEKLKVRIDMIGAACESAEKVIADTRKAYFGTRQGPTLLPTIDKAQAAKIQEQENLLRTAVNHGEGLRVPGDQRHITSALPGHLVDVLTVSDGPQSFADSSGTYLKNTPPFPSSNVNSQGALLQASGALRAAVSPSGPTSFDTTTASPLQHVNSPRSSANMMNTPSPQQQTHQQQQQQQQQQQLQQHQLQQRQKMLQLPQHQQQILAQQQLRQASMPGLGQLHGQPQMQFSQPLGAQQFQGRQLPSGALHHGMGQSQLNQGNQLNRHLNQFSSPMNTALFNSAQSTPSSQMISNMSAMVPSQTLLPRMQFGMSGGTRNLAAANLSDQMFNMGGNNPGMMSIQQQQHGTFGNMSQNTQNLQQGMMPLQNAPQTHPSFQQQRPQGQQ
Length530
PositionHead
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.04
Grand average of hydropathy-0.597
Instability index62.40
Isoelectric point9.30
Molecular weight58171.96
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23157
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.30|      14|      17|     379|     395|       2
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  379-  395 (22.35/13.35)	LGAQQF.QGRQLPSgalH
  398-  412 (20.95/ 6.18)	MGQSQLnQGNQLNR...H
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.78|      16|      17|     417|     432|       4
---------------------------------------------------------------------------
  417-  432 (29.75/13.07)	SSPM..N.TALFNSAQSTP
  433-  451 (19.03/ 6.06)	SSQMisNmSAMVPSQTLLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.93|      13|      16|     494|     506|       5
---------------------------------------------------------------------------
  494-  506 (27.30/ 9.35)	FGNMSQNTQNLQQ
  511-  523 (22.64/ 6.50)	LQNAPQTHPSFQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.37|      22|      24|     313|     335|       6
---------------------------------------------------------------------------
  314-  335 (40.96/15.06)	QQTHQQQQQQQQQQQLQQHQLQ
  336-  357 (39.41/11.05)	QRQKMLQLPQHQQQILAQQQLR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.55|      40|      53|     206|     257|       7
---------------------------------------------------------------------------
  206-  257 (61.08/62.74)	VN.HGEGLRVPGDQRHITSalPghlvdvltvSdGPQSFADSSGTYLK..NTP.........PFP
  261-  312 (54.47/31.23)	VNsQGALLQASGALRAAVS..P.........S.GPTSFDTTTASPLQhvNSPrssanmmntPSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23157 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SFADSSGTYLKNTPPFPSSNVNSQGALLQASGALRAAVSPSGPTSFDTTTASPLQHVNSPRSSANMMNTPSPQQQTHQQQQQQQQQQQLQQHQLQQRQKMLQLPQHQQQILAQQQLRQASMPGLGQLHGQPQMQFSQPLGAQQFQGRQLPSGALHHGMGQSQLNQGNQLNRHLNQFSSPMNTALFNSAQSTPSSQMISNMSAMVPSQTLLPRMQFGMSGGTRNLAAANLSDQMFNMGGNNPGMMSIQQQQHGTFGNMSQNTQNLQQGMMPLQNAPQTHPSFQQQRPQGQQ
241
530










Molecular Recognition Features






MoRF SequenceStartStop




NANANA