<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23152

Description Uncharacterized protein
SequenceMMEEKDGEVIKVEGLTALPLLNSSTIAVAINGKKKSKYVVKWALDKFVTEGKVCFKLLHVRPRITCVPTPMGSFIPISQVREDVVAAFRKDVEWQTSENLLPYKMLCTNRKVQVEVLQLESDDIVNAIAQEVTKLNIIKLVIGASSRSIFSRGQSLSSRISDSTPKFCTIYAVSKGKLLSVRPSDPEINGSSSAGDSFTSCSITSSTVHTSSSLTERSEPDSSSLYSHFRSPSLPMQRFRALSHINQNFPHRRASSNVSVHHKSLSLDFGDGEDDVRSCPVGTYLTDRDDLASSFRSLVSENYTTADDQASISGTLTDSSSRYETDINFELEKLRAELRHTRGMYAVAQTEVLDASRKINDLHKRRLEEDVKLREICLKEEEVKELARKENEKYEAAKREADYVNECAEREAAQRKEAELLALREAKEKDKLENALTGQAHQYQEFTWEEIISSTSSFDENLKIGMGGYGTVYKCSLHHTTVAVKVLHSEGSHLTKQYQQELEILSKISHPHLLILLGVCPDRGCLVYEFMENGSLEERLLRKNDTPPIPWFDRYRIAWEVASALVFLHNSKPDPVIHRDLKPANILLDRNFVSKIGDVGLSTMINSDAALSTIYKDTGPVGTLCYIDPEYQRTGLISPTSDIYAFGMVLLQLLTAKAAMGLPHIVETAIDKDNLTKVLDPEAGNWPLEETKKLAMLALKCTELCRRDRPDLKDEILPALETLKEVADKTRDSALTTKSPPPNYYLCPLLKDIMKDPCVAADGFTYDRNAIETWLKEKDISPMTSLPLAHKNLLPNYALLSAILDWKSR
Length809
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.363
Instability index40.11
Isoelectric point6.00
Molecular weight90716.33
Publications
PubMed=22660326

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23152
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.61|      13|      30|     222|     234|       2
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  191-  203 (22.40/11.94)	SSSAGDSFTSCSI
  222-  234 (23.95/13.22)	SSSLYSHFRSPSL
  255-  267 (21.26/10.98)	SSNVSVHHKSLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.65|      54|     339|     332|     387|       4
---------------------------------------------------------------------------
  332-  387 (78.26/57.12)	EKLRAELRHTRGMYAVAQTEVLDA.SRKINDLhKRRLEEDVKlREICLKEEEVKELA
  673-  727 (87.39/54.53)	DNLTKVLDPEAGNWPLEETKKLAMlALKCTEL.CRRDRPDLK.DEILPALETLKEVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.23|      32|      33|     479|     511|       5
---------------------------------------------------------------------------
  475-  507 (47.55/36.86)	CSLHHTTVAVKVLHSEGShLTKQYQQ....ELEILSK
  508-  543 (50.68/33.83)	ISHPHLLILLGVCPDRGC.LVYEFMEngslEERLLRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.34|      17|     691|      90|     106|       6
---------------------------------------------------------------------------
   90-  106 (33.75/22.42)	KDVEWQTS.....ENLLP.YKML
  778-  800 (21.60/11.77)	KDISPMTSlplahKNLLPnYALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.85|      18|      34|     570|     587|       7
---------------------------------------------------------------------------
  570-  587 (32.35/20.85)	NSKPD.PVIHRDLKPANIL
  606-  624 (26.50/15.76)	NSDAAlSTIYKDTGPVGTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.17|      17|     118|      46|      62|       8
---------------------------------------------------------------------------
   46-   62 (33.23/28.84)	KFVTEGKVC.FKLLHVRP
  166-  183 (27.95/22.88)	KFCTIYAVSkGKLLSVRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.91|      30|     313|     115|     150|       9
---------------------------------------------------------------------------
  115-  150 (44.36/45.75)	EVLQL....ESDDIVNAIA......QEVTKLNIIklvigaSSRSIF
  419-  458 (40.54/28.08)	ELLALreakEKDKLENALTgqahqyQEFTWEEII......SSTSSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.76|      17|      17|     289|     305|      10
---------------------------------------------------------------------------
  289-  305 (29.68/18.29)	DDLASSFRSLV..SENYTT
  307-  325 (25.08/14.39)	DDQASISGTLTdsSSRYET
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23152 with Med32 domain of Kingdom Viridiplantae
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