<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23144

Description Uncharacterized protein
SequenceMNNQQPPVAKDTEVEKEEESSSVITNSLEPSTNKVHEKPDIIIEDDDDDHPAAIVAMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGSANLVRDASCWQRDYEWHQDIAVVTKWLSGVSPYRWLSTRTGGSAKSTFEEKFLSQQPQSPGRFLVFALYFEYMFHQMSSYLTGVVNPSDETYCIDELSSSFGRRFTKSKHNKFLTYPRSVQLHWSQWPPNQNGAPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVAPGPGNGFQATPKTSVSNGVPASLNPPSWDGYAPLAAYLLSSQEYLLQEAKQGKKLTEQHYSDMVTLHCSPVSNFSAYVSPEAAAQSTATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVLHQIFGNPTSSFGGQAPKQTVWVSKVIKCIPAGNDFKRPQAVGAGPVPFGKNMADSGVEMGKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHVFSGPSFTPVDNYHIDVGSAIASPAFSSTSCCSASVWHDTTRDCTILKIIRVLPPAVPSNQVKANSANWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVALNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALTNPSALVPEPWQASSETLFGIDPEAMAVEPSLVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSASSPATSQGAQGGTASSAGSTQMQAWVQGAIAKISSTADSVPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRGTQLPRFMGAAQRNADSSMQKPQSGIPGKTEDSNSGAKPTLGGQVGTGAKGSEEGPSKRSRIGSGNAGQGYTYEEVNFINY
Length1064
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.08
Grand average of hydropathy-0.191
Instability index48.37
Isoelectric point5.77
Molecular weight114787.88
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23144
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     757.98|     209|     225|     128|     351|       1
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   86-  236 (205.16/125.71)	............................................................................LKQPRSNLLHKMSVPElCRNFSAVAW..C...G.......KLNAIAC..A...setcarIPSSNANPPFWIPIHIV.IP.ERPTECTVFNViADSPRDSVQFIEWS..PTS..CPRALLIANFHGRI.TIWTQPSQGSANLVRDASCWQRDYEWH.QDIavVTKWLSGVSPYR.WLS
  237-  463 (300.90/209.78)	TRTGGSAKSTfeekfLSQQPQSPGRfLVFALYFEYMFhqMSSYLTGvVNPSDETYCIDELSSSFGRRFTkskHNKFLTYPRSVQLHWSQWPP.NQNGAPSKWF.CTSKG.......LLGAGPS..G..imaadaiITDSGA.......MHVAgVPiVNPSTVVVWEV.APGPGNGFQATPKT..SVSngVPASLNPPSWDGYA.PLAAYLLSSQEYLLQEAKQGKKLTEQHySDM..VTLHCSPVSNFSaYVS
  473-  669 (251.91/148.87)	TTTWGSGVTA.....VAFDPTRGGS.VIAVVIVEGQY..MSPYDPD.EGPSITGWRVQRWESSVEDVVL...HQIF.GNPTS...SFGGQAP.KQTVWVSKVIkCIPAGndfkrpqAVGAGPVpfGknmadsgveMGKRVSFDPFDLPSDV......RTLARIVYS..AHGGEIAVAFLRGGvhVFS..GPSFTPVDNYHIDVgSAIASPAFSSTSCC.SASVWH............................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.67|      42|     177|     721|     762|       2
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  721-  762 (72.97/44.95)	AVGCTQSAAEDGIVA..LNSVIAVLDADFHSLPSTQHRQQYGPS
  899-  942 (66.71/40.43)	AQGGTASSAGSTQMQawVQGAIAKISSTADSVPSSAPNPITGPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.97|      49|     112|     843|     893|       3
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  843-  893 (79.37/53.32)	VDAILDlaSHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSASS..P
  960- 1010 (87.61/53.61)	VRLIGD..CHFLHRLCQLLHFCFFFRGTQLPRFMGAAQRNADSSMQKPQSgiP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23144 with Med16 domain of Kingdom Viridiplantae
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