<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23141

Description Uncharacterized protein
SequenceMSKDKLPKANWTQHAIAHDNFSCQDKFLSSNILFSLPTQRHCARDEMNARSVTCHIRSVSKLEAEKAWKLLTSLKLSPKSYTRPGKTPQLTKDTNAFSQHSNHTQFPRASDGNCAPARCRPVHQGVGDDGENSDSRRYAGNCFPPHSSGVAETGNVVNRQSGVDNSHARGVGEISSSHANGASKKTREVYTTCADETEEDDILLNIDVDQIVEHYQTNCTPQPSVSRFPSTTPVTKSQSLAGHEETNLPPELSINCNHGLQLGLCPGALDHLQEMKDKLIEISNDLLDNVSDLSSEQIEMLRQERSQLKLQIQHLEKFLQTVSGNEERKMSQCSASTLTSAFQYETPSAFQYATPSSFPSRINPTRLDTQFSGYNESSHFDNWNSSSLSFDVTGGNGLSTAPVEREPYIPKYLEVNYIDGSNDKKWSCRDFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGNDVFVLMPTGGGKSLTYQLPGLICPGITLVISPLVSLIQDQIMHLLQVNIPAAYLSSNMEWTEQQEILRELNSDGCKYKFLYVTPEKVAKSDVLLRHLESLHTRDTLARIVIDEAHCVSQWGHDFRPDYQCLGILKQKFPTVPVLALTATATISVKEDVVQALGLANCIIFRQSFNRPNLRYTVIPKTKKCLEDIGTFIKNNHFDQCGIIYCLSRMDCERVAEKLQEYGHKAAFYHGSMDGAQRANIQKQWSKDEINIICATIAFGMGINKPNVRFVIHHSLPKSIEGYHQECGRAGRDGLPSSCVLYYSYSDYIRVKHMISQGTVEQSPFGSGYGRSNVAASGRNLETNVENLLRMVSYCENEVDCRRLLQLIHFGEKFESTNCRKTCDNCCKTQNCIEKDVTEVAKQLVELVKTTGQKFSSAHVLEVFRGSLSQYVKKHRHESLHLHGAGKKLAKGEASRVLRHLVTEDILVEDVKKSDLYGSVSSVLKVNESKAYNLFAGGQTLRLRFPSFVKASKLGKYEATPAKGSLTSGKQSPPRTDPSGVPQSTFDPSLSAILYSALRKLRTNIVRESGDGVMAHHIFGDDTLQLIGQKVPRTKNELLDINGIGKVKINKYGDNVLQTIEATVRDYYKSDKTSSSGNDNTDSGKKRRNSINVQNGNSKDEEFFTESTGCTKKRVLKKQNKHAEVIDYRDLGYFDECIDGDLDFDETMMP
Length1180
PositionUnknown
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.548
Instability index45.71
Isoelectric point8.03
Molecular weight131856.12
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23141
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.62|      23|      23|     119|     141|       1
---------------------------------------------------------------------------
  108-  135 (36.46/21.07)	RASDGN...............caparCRPVHQ.GVGDDGENSDS
  136-  159 (36.19/20.86)	RRYAGN....................CFPPHSsGVAETGNVVNR
  160-  201 (17.97/ 6.60)	QSGVDNshargvgeissshangaskkTREVYT.TCADETEEDD.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.57|      30|      31|    1032|    1061|       2
---------------------------------------------------------------------------
 1032- 1061 (51.18/37.74)	RTNIVRESGDGVMAHHIFGDDTLQLIGQKV
 1065- 1094 (48.38/35.24)	KNELLDINGIGKVKINKYGDNVLQTIEATV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     496.82|     136|     410|     342|     477|       3
---------------------------------------------------------------------------
  342-  477 (245.65/159.28)	FQYETPSAFQYATPSS...FPSRINPTRLDTQFS.GYNESSHF.DNWNSSSLSFDVTG.GNGLSTAPVER.EPYIPKY.LEVNYIDGSND.KKWSCRDF....PWTKKLEAN...N.KKVFGNHSFRPNQREVINATMSGNDVFVLMPTGGGK
  668-  747 (67.57/37.86)	.....................................................FDQCGiIYCLSRMDCERvAEKLQEYgHKAAFYHGSMDgAQRANIQK....QWSKD.EINiicA.TIAFGMGINKPNVRFVIHHSLP..............
  753-  884 (183.60/116.98)	YHQECGRAGRDGLPSScvlYYSYSDYIRVKHMISqGTVEQSPFgSGYGRSNVA...AS.GRNLETN.VEN.LLRMVSY.CE.NEVD.........CRRLlqliHFGEKFEST...NcRKTCDNCCKTQNCIE.KDVTEVAKQLVELVKTTGQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.19|      29|      33|     594|     623|       4
---------------------------------------------------------------------------
  594-  623 (44.50/32.82)	QCLG.....ILKQKFpTVPVLALTA.TATISVKEDV
  625-  659 (42.69/25.98)	QALGlanciIFRQSF.NRPNLRYTViPKTKKCLEDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.30|      12|      27|     214|     225|       6
---------------------------------------------------------------------------
  214-  225 (25.08/16.45)	HYQTNCTPQPSV
  243-  254 (22.22/13.64)	HEETNLPPELSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.38|      21|      29|    1103|    1130|       8
---------------------------------------------------------------------------
 1103- 1123 (34.56/29.34)	TSSSGNDNTDSGKKRRNSINV
 1135- 1155 (34.82/14.24)	TESTGCTKKRVLKKQNKHAEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.92|      21|      29|     272|     300|       9
---------------------------------------------------------------------------
  264-  284 (33.42/13.37)	LCPGALDHLQEMKDKL.IEISN
  293-  314 (28.50/25.61)	LSSEQIEMLRQERSQLkLQIQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.43|      19|      31|     964|     982|      10
---------------------------------------------------------------------------
  964-  982 (33.18/17.60)	LFAGGQTLRLRFPSFVKAS
  996- 1014 (35.25/19.13)	LTSGKQSPPRTDPSGVPQS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23141 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARCRPVHQGVGDDGENSDSRRYAGNCFPPHSSGVAETGNVVNRQSGVDNSHARGVGEISSSHANGASKKTREVYTTCA
2) PKSYTRPGKTPQLTKDTNAFSQHSNHTQFPRASDGNCA
3) YKSDKTSSSGNDNTDSGKKRRNSINVQNGNSK
4) YQTNCTPQPSVSRFPSTTPVTKSQSLAGHEETNLPPELS
117
78
1098
215
194
115
1129
253










Molecular Recognition Features






MoRF SequenceStartStop




NANANA