<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23140

Description Uncharacterized protein
SequenceMALETPSSVVRRSPVRYPEVDLSRLSLSEQIVQKGSPATPVVVDDVMYVAVGKDLKETEPTLTWALHKSGGRKICIVHVHTPAQKIPMMGTKFNIDQLDVHQVRAYHEKEKQDMHMILEKYILICGRAGVCADKLVLEMDSIEKGIVELISQHGIGKLVMGAAANKCYSKKMSDLRSKKAIYVRLQAPTFCCICFVCKGNLIFTRESKSDRLNTDSVSLSVPASPVNDIIVRSGSATEGYSEQVKLRGAFTEYPRVSSDSHGTIFSGHPSTGTLQANFPFMSSDRSADSWDGIPQISSSVASRFSPSSSVEMVDDSFSKTERNETAFDPSGLRYFNFDPYQSSAPSIIQAEKVNNELAGSMNDELYDRYEQHVAEAETARREAFEESIKRRKAEKDAIEARRRAKASETFYADELRWRREIEEALAKDREKADQMKAQLNKLLRDLQAAQAQNSSLEGQLLVSDAQVQELEQKMFSAVDLLQKYRKERDELEVERDEALKSAEALREQHSDGSSLTSTSSLFAEFYFHEIEEATRTFDPALKIGEGGYGCIYRGLLRHTQVAVKMLHPHSLQGPSEFQQEVNILSKLRHPNVVTLIGACPEAWTLVYEYLPNGSLEDRLTCKDNTPPLSWQTRIRVAAELCCALIFLHSCTARGIIHGDLKPANVLLDANFVSKLSDFGICRVLSEDEFSENSTTLCYRTDPKGTFAYMDPEFLQTGELTRKSDVYSFGIILLRLLTGRSAFGIKNEIQYALDKGNLKNLLDPTAGDWPFVQAKQLAHLAMSCCDKNSRCRPELSSEVWKVLEPMRASCGASSFRIDSEEHCDIPSYFICPIFQEIMQDPVVAADGFTYEAEALRGWLDSGHETSPMTNLTLSHKNLVPNHALRSAIQEWLQQN
Length894
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.08
Grand average of hydropathy-0.377
Instability index50.36
Isoelectric point5.70
Molecular weight100198.41
Publications
PubMed=22660326

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23140
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.53|      23|      24|     257|     279|       1
---------------------------------------------------------------------------
  234-  254 (18.66/ 9.32)	.....GSATEGYSEQVKLRGAFteyP
  257-  279 (42.16/32.08)	SSDSHGTIFSGHPSTGTLQANF...P
  282-  294 (15.71/ 6.46)	SSDRSADSWDGIP.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.41|      20|      24|     375|     398|       2
---------------------------------------------------------------------------
  379-  398 (31.78/25.42)	ARREA......FEESIKRRKAEKDAI
  400-  425 (27.63/11.56)	ARRRAkasetfYADELRWRREIEEAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     255.19|      75|     165|     571|     646|       3
---------------------------------------------------------------------------
  571-  646 (128.43/87.24)	LQGPSEFQQEVNILSKLRHPNVVTLIGACPEAWTLV....YEYLPNGSLEDRLTCKDNTPPLSWQTRIRVAAElCCALIF
  736-  814 (126.76/81.88)	LTGRSAFGIKNEIQYALDKGNLKNLLDPTAGDWPFVqakqLAHLAMSCCDKNSRCRPELSSEVWKVLEPMRAS.CGASSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.35|      19|      22|     114|     135|       4
---------------------------------------------------------------------------
  114-  135 (26.38/32.18)	MHMIlEKYIL.ICGRAGVcaDKL
  139-  158 (28.97/19.98)	MDSI.EKGIVeLISQHGI..GKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23140 with Med32 domain of Kingdom Viridiplantae
Unable to open file!