<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23139

Description Uncharacterized protein
SequenceMQRYHGGSCTSAVNNSTIGGPSARDSSRVDSASLPPNFSRRPLQLTPFKLKCDKEHLNSRLGPPDFLPQTPNCPEETLNKEYVQSGYRETVEGLEEVKEISLTQLPAFTKPVIFKCKEAIRKCHRAINESRAQKRKAGQVYGVPLEGLQLTKPGIFPDQRSSGEEFRKKWIEGLSQQHKRLKSLADHVPHGYRRKSLFEVLVRNNVPLLRATWFVKVTYLNQVRPGSSSISSGVPDKTHISRSEQWTKDVIDYLQYLLDEFISRNSVHSALQIRDRSQQMVYAGSIPLKSDPTLGSVDCEEPSLHFKWWYVVRILQWHHREGLLIPSLVIDWVLNQLQEKELLGVLQLLLPVVYGFIDTVVLSQSCVRTLVGIALRFIQEPSPGGSDLVDNSRRAYTMAALVEMLRYLMLAVPDTFVALDCFPMPPCVMTNVVTDGSLYSKVTEDTRKVKNGPFEVAYFLRDKGPEIRSDSYSISRAVSSIQKRAQHLATAARPGHPGQSVVKALHALDKALAHGDLREAYKFLFENVHESSIDDCWFAEVSSCLRSSLKYIRGVTLSSICSVFYICEWATCDFRDFRFAPPRGMKFTGRKDFSAIYVAVRLLKLKMRETGISSRPRDPKIVKNNHLRKDPGQLTNYAGRTLASGASESLSNSRRAREKCNDFLGMFDSPSPLHDTIVCWIDQHEVQNTEGFKRVQLLIIELIRAGIFYPQAYVRQLIVSGIMDGDEPLSDPVKQKRHCKILKHLPGPYVHDALEEARIADTPVLSEVVNVYCNERKLVLHGMIDSYNSGCGSSHHKHKPRPNSGENLSAPSIDQLSSSESGPFMSSKNVGRDVELEELKRSITALLQFPSSSSTDTGVEDSQVSLRKAVVYGSNGMDNSEGTPGCEECRRAKKQKLSEEKSSYSQIYQQNPSDDEETWWMRKGQKSIESFRAEPPPKPAKTASRGRQKIVRKTQSLAHLAAARIEGSQGASTSHVCDSKVSCPHHRPGIEGSVPKSGDGIRMPNGDVVSIGKILKRLRFVDKRTMTLWLIGIVKELVEESEKTVTKVGQYGRPFSAADERGCVRWKIGEDELSVVLYLIDACDELVLAARFLLWLLPKVLGSCSATVHGSRNILTIPKNTENNICEVGEAYLLSSMRRYEGIIVAADLIPETLSVVMHRAQTILTSNGRVSGSPAVIYVRYLLKKYGSVGSVAEWEKNVKSTFDKRLASEVESGRLVDGEFGFPLGVPVGVQDPDDYFRQKITGVRVSRVGLSMRDIVQKKVDEAVNYFYGKDRKLFGPNSGKLPGFQKWEDVYQIGQQIVMGLMDCMRQTGGAAQEGDPTLVSSAISAIVINVGQVIAKIPELTASNNHPSSSTSASLQFARCILRIHVTCLCILKEALGERQSRVFEVALATETSSALAQLFAPGKAPRSQFQLSPESNDSNLSSDILNNSSRVVIGRAAKISAAVSALVIGAILQGVSSLERMVSLFRLKDGLDVVHFVRSMRSNSNGNARSVGILKADSLAEVSVHWFRVLVGNCRTVSDGFIVDLLGEASILPLFRMQRILPLNLVFPPAYSMFAFVLWRPLILNASSGTRDEVQHLHHSLMLAFADVIKHLPFREVCLRDTHSLYDLIAADTVDSDFASLLEASGVDLRLKTSSFVPLRARLFLNALIDCRIPQTIAKLNDGNQLALQGESKFHSAENETKLLDKLVYILDTLQPAKFHWQWVELRLLLNEQAVMEKLEAHDLSLVEALRSLSPNTDKASVSENESNIIEMILTRLLVRPDAAPLFSEVVHLLGRSLEDSMLLQAKWFLGGNDVLLGRKSVRQRLHNIAVSRGLSTRAQYWKPWGWCTTNSDPTTSKREKLKSEVSSIEEGEVVDEGTTLKRPVKGSGRTVDVEKLHVTERALVDLILPCLDQASDDSRSTFASDMIKQMNLIEQQINAVTREASKPAGTVASGIESPTTKSSRKGTRGSSPGLARRATGPAETVPPSPGALRASLSLRLQFILRLFSIIYADREPSGRNMRHVLASVILRILGSRVVHEDASYSFNQACNSKREVDSLVEASATASVVVSLESLFDRLLLLLHGLLSSHQPRWLKWKSNSKAPSESSKDYSAFEREGAESLQNDLDRMQLPETVRWRIQCAMPILFPSARLSISCQPPSVLPAALSSLLPSNPVSVLHSSNGSNQTQRNPGSLLRTATSVAGKAKHVSSQQENDHEVDPWILLEDGAGSSHSSSNSPLVGGGDHANLKASNWLKGTVRVRRTDLTYIGAVDDDS
Length2262
PositionKinase
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.256
Instability index46.13
Isoelectric point8.91
Molecular weight250667.48
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23139
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.04|      26|     610|     257|     301|       1
---------------------------------------------------------------------------
  272-  301 (35.68/49.81)	QIRDRsQQMVYaGSIPLksDPTLGSVDCEE
  863-  888 (48.36/19.27)	QVSLR.KAVVY.GSNGM..DNSEGTPGCEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.56|      55|     488|     206|     271|       7
---------------------------------------------------------------------------
  206-  271 (83.91/75.85)	VPLLRATWFVKVTYLNQVrpgsssISSGVPDKTHISRSEQWTKDVIDYLQYLLDEFisrnsVHSAL
  700-  754 (98.65/62.84)	IELIRAGIFYPQAYVRQL......IVSGIMDGDEPLSDPVKQKRHCKILKHLPGPY.....VHDAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.05|      26|     490|     924|     991|      11
---------------------------------------------------------------------------
  947-  972 (43.34/89.00)	RQKIVRKTQSLAHLAAARIEGSQGAS
 1601- 1626 (45.70/ 7.45)	REVCLRDTHSLYDLIAADTVDSDFAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.15|      37|    1289|     583|     645|      17
---------------------------------------------------------------------------
  584-  622 (55.33/74.47)	GmKFTGRKDFSAIY.....VAVRLLKLkMRETGISSRPRDPKIV
 1283- 1324 (63.83/25.60)	G.KLPGFQKWEDVYqigqqIVMGLMDC.MRQTGGAAQEGDPTLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.24|      16|    1287|     778|     793|      18
---------------------------------------------------------------------------
  778-  793 (31.77/20.84)	LVLHGMIDSY.........NSGCGS
 2068- 2092 (21.47/11.30)	LLLHGLLSSHqprwlkwksNSKAPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23139 with Med12 domain of Kingdom Viridiplantae
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