<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23120

Description mediator of RNA polymerase II transcription subunit 24-like
SequenceMVNFAKNQMETSKVTSKTSSLKALLLKAWCERWTDLHWGTQIKSILPRGVSGDVYNLADIILQQALIGQGPNHLVLSYLKHSLSSQLVSYAAVLQRISKFDGFQKPYCILSLLEFLENIQSGITCKGKPEEGILPGATLSLAHWLLQCLHHTYLNPGDLQQELIKSCLHLLQTMLQCKFTCAMLYLAKHENKDLYVDIVKKCQDILDEPSPELSDTLQSCLQELTHLDTAFRYDTPSECITFCMQPLIAVQVMINPNCNTQTLASQLLLLKRLKNYSYARLYFELLRSSLMSLNDVLDTGEESQWGAFTFIKLPHLLHRLYIDNSDDIVECFEMLLELFPLLDILDARCACNTVESLLTELEKLHILSEQQSKQIIDKRKEATVNLHSPETAPPSISKVTSGSGYLQASVTEKLISEVPHLIPGVQQVLFCCHQNCLRSVPELLEDYHQIRHPKFHTGYTGHMRHKHPELDNDILRPIRISRNLPRESINPSAEEALQSQQFSQSNINEEETQHRMMLNIQEAGARYGMKINVSKTKVMRIGTERRMNVTLDGEKLEEVENFKYLGGMIYSNGSCEGSVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAMRSKMCCLPVCAAAWLCSYMQVIHQEALLKPMNMVQQFLTALTLDETPQQDFFKERSGLMVQIIRKMQCDVFPPVSPKTKVLTLSHCIVSKGSISDQLHSVWESCIAKGWLTIQAAHTFQSMINTCGAEWLVTNLIKEMLKLLFELELNIAVNLVFSIFHLDIEKCTLLLLEHLPQYLHNKFLCGELMEPQSSALARLTTYCIYAAAQVQPTTNRKKKKEEFDDFDEPAAKILRLAQGGVGEMSEGEGMFTPNTPIRPLQEPLLSTVKSLFSYLLIITERPSAICQQTHFVLRFLEYLVSCGQDVAPPVLQHVPSPLVPNLIRALPESIAPSLILKLYDLNTLGGRRDTSRDLCLLRNMQIKTLSHSLG
Length1044
PositionTail
OrganismDiaphorina citri (Asian citrus psyllid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Psylloidea> Liviidae> Diaphorina.
Aromaticity0.07
Grand average of hydropathy-0.110
Instability index50.17
Isoelectric point6.08
Molecular weight118199.77
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23120
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.21|      13|      18|     135|     150|       2
---------------------------------------------------------------------------
  135-  150 (22.60/20.45)	PGatlSLAHWLLQ.CLH
  156-  169 (21.61/11.00)	PG...DLQQELIKsCLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     205.74|      81|     541|     189|     273|       3
---------------------------------------------------------------------------
  189-  241 (71.98/42.94)	.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HENKDLYVDIVKKCQ.DILDEPSPELS.DTLQSCLQELTHLDTAFrYDTPSECIT
  242-  273 (16.96/13.07)	FCMQPLIAVQVMINpNCNTQTLASQllLLKRL..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  729-  782 (64.03/33.62)	................................knysyarlyfellrsslmslndvldtgeesqwgaftfiklphllhrlyidnsddivecfemllelfplldildarcacntvesllteleklhilseqqskqiidkrkeatvnlhspetappsiskvtsgsgylqasvteklisevphlipgvqqvlfcchqnclrsvpelledyhqirhpkfhtgytghmrhkhpeldndilrpirisrnlpresinpsaeealqsqqfsqsnineeetqhrmmlniqeagarygmkinvsktkvmrigterrmnvtldgekleevenfkylggmiysngscegsvvfsenggdsffekwvrdcmveggrpkpykkmldekdqagvddllrqfnssdaefkncpklncyeiclnipaviydvlgawetsvlsstdvkrildamrskmcclpvcaaawlcsymqvihqeallkpmnmvqqfltaltldetpqqdffKERSGLMVQIIRKMQcDVFPPVSPKTKvLTLSHCIVSKGSISDQL.HSVWESCIA
  786-  851 (52.77/26.78)	LTIQAAHTFQSMIN.TCGAEWLVTN..LIKEM...................................................................................................................................................................................................................................................................................................................................................................................................................................................lkllfelelniavnlvfsifH......LDI.EKCT.LLLLEHLPQ..............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.89|      75|     513|     345|     492|       4
---------------------------------------------------------------------------
  386-  492 (107.50/199.22)	LHSPETA..P...PSISKVTSGSGYLQAsVTEK..LISEVPHLIPGVQQVLFCCHQNClrsVPELLEdyhqirhpkfhtgytghmrhkhpeldnDILRPI..RISRNLPrESINPS
  924- 1007 (116.39/64.00)	MFTPNTPirPlqePLLSTVKSLFSYLLI.ITERpsAICQQTHFVLRFLEYLVSCGQDV...APPVLQ...........................HVPSPLvpNLIRALP.ESIAPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23120 with Med24 domain of Kingdom Metazoa
Unable to open file!