<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23113

Description pre-mRNA-processing protein 40A-like isoform X3
SequenceMAGNPQSSGAQPLRPAVVGSTGPPQNFGPPMSMQFRPVVPAQQTHQFIPAASQQFRPVGQGVPGSNIGISSGQTQMHHFPQPAQHLPRSGPPAPPSSQAIPMPYGQPSRPMTSGSLQPQQNPQMQNSHLPNLGGIGMPLSSSYTFATSYCQPPNTLNNPSQYQPASQMQAPITPAMGQPWSAPGTQNVPLVTPLVQAAPQSSATGAAVGTAATTNAQPRSSEQVSSDWQEHTSVDGKRYYYNKKTRQSSWEKPLELMTPIERADASTDWKEFSTSDGRTYYYNKVTKISKWIIPDELKLAREQALRAAAQQAHTETGTASVAPVAPTVSSGEIPSATTDSVTPGTTSAVVSSSVPVAVNSITPPAVMASVSPSVVPSAGISSSSSLGIPNTIGSSNLQTTVTPLPAPVSANTVVSTVAIESASSNTKSNHDSSSLLNTASVPDGASAQDLEEAKKAMPVTGRVNVTPLEEKTIDEEPLVYSNKQEAKAAFKALLESANVESDWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRIKQKKAREDFTRMLEECKELTSSTRWSKAVTMFENDERFHAVERARDREDLFESYLVDLQKKERAKAAEEHKRNIMEYRTFLESCDFIKANTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHDLEKEEEEQRKIQKEQLRRLERKNRDEFRKLMEEHVAAGILTAKTHWRDYCMQVKDLPPYIAVSSNTSGSTPKDLFEDVAEELDKQYHEDKAQIKEAIKIRKIALASSWTFEDFKAATSGDDSLQGISETNMKLVFDELLERLREKEEKEAKKRQRLADNFSDLLYSIKEITASARWEDCKSLFEDTQEYRSIGDENFVKEIFEEHVAHLQEKLKEKERKREEEKMLSKNVRRGKDVTNGCAGRAVPVPRCLALSRLSGRTTTQGSSLESCARYCGARDFHVYSGDGIRASHWLKHAFSSVPFHVFFISLLY
Length983
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.689
Instability index51.08
Isoelectric point6.62
Molecular weight109498.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23113
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.08|      39|      40|     225|     263|       1
---------------------------------------------------------------------------
  153-  184 (37.42/19.14)	...PNTLNNPSQYQPASQMQAPITPA..........................mGQPW....SAPG.
  185-  237 (22.95/ 8.72)	.......TQN......VPLVTPLVQAapqssatgaavgtaattnaqprsseqvSSDWQEHTSVDGK
  238-  278 (64.25/38.44)	RYYYNKKTRQSSWEKPLELMTPIERA.........................daSTDWKEFSTSDGR
  279-  314 (43.47/23.49)	TYYYNKVTKISKWIIPDELKLAREQA.........................lrAAAQQAHT.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     184.76|      19|      19|     579|     597|       2
---------------------------------------------------------------------------
  556-  577 (19.79/10.24)	D.......ftrMLEE...C......KELTSSTRWSKAV
  578-  596 (28.53/18.34)	T..........MFEN...D......ERFHAVERARDRE
  597-  616 (16.55/ 7.25)	D..........LFESylvD........LQKKERAKAAE
  617-  645 (16.75/ 7.44)	EhkrnimeyrtFLES...C......DFIKANTQWRKVQ
  646-  663 (22.69/12.93)	D..........RLED...D......ERCSRLEKI.DRL
  664-  680 (20.54/10.94)	E..........IFQ...........EYIHDLEKEEEEQ
  834-  852 (24.47/14.58)	D..........LLYS...I......KEITASARWEDCK
  853-  871 (19.04/ 9.56)	S..........LFED...T......QEYRSIGDENFVK
  872-  895 (16.39/ 7.10)	E..........IFEE....hvahlqEKLKEKERKREEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     103.34|      19|      19|     334|     352|       3
---------------------------------------------------------------------------
  334-  352 (31.67/18.21)	PSATTDSVTP.GTTSAVVSS
  355-  369 (24.35/12.12)	PVA.VNSITP....PAVMAS
  376-  395 (24.77/12.47)	PSAGISSSSSlGIPNTIGSS
  398-  415 (22.54/10.60)	QTTVTPLPAP.VSANTVVS.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     287.26|      81|     274|     466|     553|       4
---------------------------------------------------------------------------
  466-  553 (124.71/104.47)	TPLEEKTIDEeplvysnKQEAKAAFKALLE...SANVESDWT.WEQAMRVIINDKRYGAL..KTLGE.R..KQAFNEYLGQRKKQEAEERRIKQKKA
  689-  760 (79.82/53.87)	RRLERKNRDE..............FRKLMEehvAAGILTAKThWRDYCMQVKDLPPYIAVssNTSGStP..KDLFEDVAEELDKQYHE.........
  762-  829 (82.73/53.95)	.................KAQIKEAIK..IR...KIALASSWT.FEDFKAATSGDD...SL..QGISE.TnmKLVFDELLERLREKEEKEAKKRQRLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.52|      12|      18|      25|      38|       5
---------------------------------------------------------------------------
   17-   37 (15.04/ 9.61)	VvgstgppQNfgPPMSMQFRP
  119-  130 (22.49/ 8.25)	Q.......QN..PQMQNSHLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.04|      34|      41|      40|      75|       6
---------------------------------------------------------------------------
   40-   75 (59.48/34.36)	PAQQTHQFIPAA..SQQFRPVGQGVPGSniGISSGQTQ
   82-  117 (59.56/29.31)	PAQHLPRSGPPAppSSQAIPMPYGQPSR..PMTSGSLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23113 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATSYCQPPNTLNNPSQYQPASQMQAPITPAMGQPWSAPGTQNVPLVTPLVQAAPQSSATGAAVGTAATTNAQPRSSEQVSSDWQ
2) MAGNPQSSGAQPLRPAVVGSTGPPQNFGPPMSMQFRPVVPAQQTHQFIPAASQQFRPVGQGVPGSNIGISSGQTQMHHFPQPAQHLPRSGPPAPPSSQAIPMPYGQPSRPMTSGSLQPQQNPQMQNSHLPNLGGIGM
3) QALRAAAQQAHTETGTASVAPVAPTVSSGEIPSATTDSVTPGTTSAV
4) STVAIESASSNTKSNHDSSSLLNTASVPDGASAQDLEEAKKAMPVTGRVNVTPL
146
1
303
415
229
137
349
468










Molecular Recognition Features






MoRF SequenceStartStop




NANANA