<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23112

Description cellulose synthase-like protein E6 isoform X1
SequenceMDAGDLRRVMRSMGVDLWTLIETALDVAAADYGKELRARRDGIVERLYAAGPGAADGCRNCAPGAAAERAAAVGLPTGGVEGKGSSSPAAGKGATAASPLSMNGDEKGEEREGEDDDHPIDDKTKILAIKEFLEDPDQKEDSLVSLLQNLADMEITFKNLKETNIGRHVNGFRKHPSPEVRQLVSDPMIEPPAMVISTVLSVMAYEYPPEKLSVYLSDDAGSELTFYALLEASRFAKSWIPFCKKFKVEPRSPDAYFKGECMCPKDGLQAVEWGKIKSLYTEMENRINDAVKFGKVSENIRKQHRGFLEWNRATTSRDHQAILHILIDGRDTNAIDDEGFTLPTLVYMAREKRPYRHHNFKAGAMNSLVRVSSEISSGAVMLNVDCDMYSSNSETVKDALCFLMDEEKGHEIAYVQLPQLFNNITKNDIYGSSPMWAWKDFHGLDGYGGPLYVGSGCFHRRESLCGKHFNETCKAALRANERNMEASASTLEERAKSLITCTYEDNTEWGKEMGLKYGCPVEDVITGLAIKCRGWKSIYFNPSRAGFLGVAPVTLAQTLVQHKRWSEGDFQIFLSKYCPFLYGKGKLKLGLQMGYSIYCLWAPCSFPTLYYVIIPPFTLLHGISLFPKASGIWFVPFSYVIAATTMFSLWEAFLFGCTMKRWWNEQRMYLFKRLASYPFAFVDTILRHLGLNKSTFIITAKVADEEVSKRYKQEMMEFGSPSPMFTILATLAMLNLVCLIGGAKRLVLGEGIGLLGSMLLQFVLCASVVLINMPVYQAMFFRNDGGRMPTSVTLTSVALAMLLAYMVPEQYFRLPRVYE
Length819
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.11
Grand average of hydropathy-0.139
Instability index43.04
Isoelectric point6.48
Molecular weight91518.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23112
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.90|      25|      31|     591|     619|       1
---------------------------------------------------------------------------
  565-  587 (20.46/ 7.49)	...........W.SEGDF.QIFLSKYCP..FlygkgKL
  594-  619 (47.01/38.44)	GYSIY....CLW.APCSFpTLYYVIIPP..F.....TL
  622-  649 (23.43/ 6.71)	GISLFpkasGIWfVPFS.....YVIAATtmF.....SL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.87|      19|      34|     718|     736|       2
---------------------------------------------------------------------------
  718-  736 (33.06/19.91)	FGSPSPMFTILATLAMLNL
  755-  773 (31.81/18.91)	LGSMLLQFVLCASVVLINM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.01|      17|      38|     129|     145|       7
---------------------------------------------------------------------------
  129-  145 (28.09/19.69)	IKEFLEDPDQKEDSLVS
  169-  185 (29.92/21.48)	VNGFRKHPSPEVRQLVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23112 with Med26 domain of Kingdom Viridiplantae
Unable to open file!