<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23109

Description U-box domain-containing protein 35-like isoform X2
SequenceMTLLNVGNYIPISDVREDVAAAYKKEIEWQTNSMLLLYKQMCAQRRVEAESVVIEADNVAEAISGEIAKFSISKLVIGSSSRNVFTRKIGSNKMSSRISSCIPGFCTVYVVLKGKLLSVRASTTVVDDMTNEENISSTSRSFSSLSSSARSEWTDTDITSSSLHHASLPIQRNQALANINSNFVNMGASPSDTLHTRSISLFTDDDFISSSSIVTETQCDNSMVSSYRSFQTDNQLHSPDQASTSEVRTDSSVPGNQVDVSFELEKLRVELRHFQKLCVVARSESNDASQQLHELTARRMEEEIKLKEIELREQMVRELARQEREKRETAERESKFIKECAEREVLHRKDSENNAAREANEKQRLEKALACNDEPYKKYTWEEIESATSSFSDCLTIGRGANGIVYKGSFHHTTAAVKVLHSNEGHGTTQFKQELEILSKIHHPHLLLLLGACTERGCLVYEYMENGSLDDRLQCKDNTAPLPWFHRYRIAWEVASALAFLHNSKPEPIIHRDLKPANILLDRNFVSKIGDVGLSTLLPAVNLPMCTMIKDTTPVGTMFYIDPEYQRTGLVSAKSDIYALGMVILQLLTAKPPMGLTLIVERALEEGNLMEVLDPGAGQWPLEETQELALLGLGCAELRRKDRPALKEQVLPLLEKLKVIADKAHVCASHTPSAPPNHFICPILQEVMNDPCVASDGYTYDRKAIEIWLGMNDKSPMTNLQLPNKNLIPNHSLRSAIMDWKSRSQ
Length745
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.359
Instability index45.01
Isoelectric point5.85
Molecular weight83448.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23109
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.61|      12|      48|     151|     162|       1
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  151-  162 (23.28/16.98)	SEWTDTDITSSS
  200-  211 (22.33/15.98)	SLFTDDDFISSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.74|      35|      48|     293|     327|       2
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  293-  327 (54.73/36.74)	HELTARRMEEEIKLKEIELREQMVRELA.RQEREKR
  343-  378 (51.01/33.77)	REVLHRKDSENNAAREANEKQRLEKALAcNDEPYKK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.82|      24|     438|      82|     107|       4
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   82-  107 (37.35/32.84)	RNvFTRKIGSNKMSSRISSC.IPgFCT
  523-  547 (39.46/24.52)	RN.FVSKIGDVGLSTLLPAVnLP.MCT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.30|      39|     168|     471|     511|       7
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  471-  511 (68.04/51.87)	DRLQCKDNTapLPWFHRYRIAWEVASALAFLHNSKPE.....PIIH
  642-  685 (61.27/39.83)	DRPALKEQV..LPLLEKLKVIADKAHVCASHTPSAPPnhficPILQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23109 with Med32 domain of Kingdom Viridiplantae
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