<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23108

Description mediator of RNA polymerase II transcription subunit 23
SequenceMEQNQRAPRAPQPHPARAAIVDLFNLYLGRNSRQRPEDPSRETSNKMQKRVTAPNRDLPPRDEKFILDFEQLQGQFPDQEQLRAVTESVLVSFIIQCSGHAPQSEFLLFAIRGLCSIGYVKWDTFLPSLLSAVSSAEASVGQGTPGAAGVQSTGVSSSMMIPSSSTVAIPNSSNFHASNPASPLSTIHGIGSPAQSITDQSAGATLSPIKPSELSGSAQQSMMRANQSLRGTAISYLRQLTCRIILAGLESSLKPTTHIEIFSHMLNWLVNWDQRLQCLDEVDGMKAWKPERPLHEWMHICLDVLWKLVEEDRCRIPFYELLRSNLQFMDNIPDDEALFTIILEIHRRRDVVAIHMQMLDQQLHCPSFATHRFLSQSYPSITGEPLANLRYSPITYPSVLGEPLHGEDFAYSIPKGSLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYKTQQASTPGAVFSPEMICEAVVDRTIELLKMTNSETQCWQEWLIFADIFFFLMKSGCIDFLDFVNKLASRITKGDQQILRSNHVTWLLAQIIRIEIVMNTLCSDPKKVETTKKIISFHKEDKNFDSNNVNAQSILLDFISSSQTLRIWSFNASIREYLNNDQLQKGKQIDEWWKQVAKASGERTMDFMNLDERSMGMFWVLSFTMAQPACDAVMNWFTSAGVTEILQGSNVQSNDRMVMLRETYPLSMTLLSGLSTNLCLKLAYQLEDAIFLGQVIPSIAMVETYVRLLLIAPHSLFRPHFTTLTQRSPSILGKTGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRFFRLAENLCMNLILSIRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGVAEVEHMLYLQPLLEQIMATSQHTWSEKTLRYFPPLLRDFLISRVDKRGQAIQAWQQVCLFSL
Length926
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.09
Grand average of hydropathy-0.130
Instability index47.52
Isoelectric point8.20
Molecular weight105323.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23108
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.61|      15|      17|     378|     394|       1
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  378-  392 (30.14/23.12)	YPSITGEPL..ANLRYS
  396-  412 (25.47/10.92)	YPSVLGEPLhgEDFAYS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.54|      20|      22|     165|     184|       2
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  165-  184 (36.38/24.05)	ST...VAIPNSSNFHASNPA..SPL
  185-  209 (25.17/14.22)	STihgIGSPAQSITDQSAGAtlSPI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.36|      37|     110|     704|     741|       3
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  704-  741 (56.52/49.44)	LSTNLCLKLAYQLEDAIFLGQVI..PSiAMVETYVRLLLI
  815-  853 (56.83/44.16)	LAENLCMNLILSIRDFFLVKKELkgPT.EFTETLNRITII
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.05|      21|     114|      98|     121|       4
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   98-  121 (31.03/33.37)	SGHAPQSefLLFA...IRGlCSIGYVK
  215-  238 (33.03/21.88)	SGSAQQS..MMRAnqsLRG.TAISYLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.48|      30|     113|     502|     553|       5
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   67-   96 (51.09/20.76)	LDF.EQLQGQFP..DQEQLRAVTESVLVSFIIQ
  511-  543 (42.39/40.50)	LDFvNKLASRITkgDQQILRSNHVTWLLAQIIR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.04|      17|      22|     414|     435|       6
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  419-  435 (33.27/23.50)	D.WERAL...RCLRHALRTTP
  438-  458 (24.77/ 6.74)	DwWRRVLlvaPCYKTQQASTP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.60|      17|      22|     278|     299|       7
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  278-  299 (31.89/33.98)	CLDEVdgmkaWK...PER...PLHEWMH
  301-  323 (23.70/13.12)	CLDVL.....WKlveEDRcriPFYELLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.39|      42|     293|     582|     626|       8
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  582-  626 (65.14/54.83)	QSILLDFISSSQtlRIWS......FNASIREYLNNDQLQKGKQIDEwWKQV
  874-  921 (70.25/46.31)	QPLLEQIMATSQ..HTWSektlryFPPLLRDFLISRVDKRGQAIQA.WQQV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23108 with Med23 domain of Kingdom Viridiplantae
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