<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23097

Description ATP-dependent DNA helicase Q-like 4A
SequenceMCARSIACIIQGPERLQNLQIEKAWKALCRSRVTSKQYLRPGLTAPVLNHNTYCVPAQVSNSNNINNVVDFQRHGMTSHASIYPHKASGDVPCLNARQPNVVGASMPHSSSHRGPENHQTVHADSDKHANDNFLDVLDDDEIMENIDVDQIVMEHYHGTGTPEVSTSKHTPCTPVGGGGDTTGPSENSLPHELCETCIHGFKLALCPEATTHLQEMKDRLITVSNELLDNAAELGPQRCENLRQERLHLNKQIQVLEKYLHRLTQDGERWRSHLTASTTAAQVFQPETPVNTFPIDPARFNSQVHIGNEPGNSGTWSSMAPFSYTDRTSILSAHTEREMFTPKLVDVNYMEGSSDKRWKSEDFPWTKKLEANNRKVFGNHSFRPNQREVINATMSGHNVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQANIPAAYLNASMEWAEQQEIFRELMSAICKYKLLYVTPEKIAKSDVLLRHLDSLYSRGSLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKYPNTPVLALTATATASVKEDVVQALGLVNCIIFQQSFNRPNLWFSVMPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQLTVLWKVVEIVLVPKPKHSTSGENRSSLPVMKWSFAPGTNLASGISFKIERESRQKLNEFSKELRSFRRVDMSGRNIGDEGLFFLSESLGYNQSAEEVNFSGNGITAAGLKAFDGILQANTVLKTLNLSGNAIGDDGAKVISASNISVYHYLSAFLEYTVSWAKVHKYGDRVLEIIESTIKEYQKANRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEGNCPIDNLFQEYTFKKFPAPAKVSKMSRSEVTPAKGSLLPEMMSTPSIDANTPSQNEVDLNLSAKLYAALRLLRTVLVKEAGEGVMAYHIFGNATLQHLSKRIPRTKEELLEINGIGKAKVHKYGDRVLEIIESTIKEYQKANRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEGLRGCFPGTTLDDKSCVGRPSCYFSTGPGSEQAMTWFWNWNLDLIHYVKDWVRVEQSWAPRLTRTWPAQNRGPKE
Length1233
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.524
Instability index47.21
Isoelectric point7.87
Molecular weight137295.39
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23097
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.27|      27|      27|     707|     733|       1
---------------------------------------------------------------------------
  687-  714 (42.17/30.21)	RSFRRVDMSGRNIGDEGLFfLSESLGYN
  715-  742 (39.35/27.63)	QSAEEVNFSGNGITAAGLKaFDGILQAN
  743-  766 (25.75/15.16)	TVLKTLNLSGNAIGDDGAKvISAS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.27|      14|      88|     795|     808|       2
---------------------------------------------------------------------------
  795-  808 (27.64/21.79)	LEIIESTIKEYQKA
 1041- 1054 (27.64/21.79)	LEIIESTIKEYQKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     460.57|     113|     243|     777|     915|       3
---------------------------------------------------------------------------
  785-  915 (232.65/202.85)	AKVHKYgdrvleiiestikeyqkaNRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEG..NC
 1031- 1163 (227.93/173.37)	AKVHKYgdrvleiiestikeyqkaNRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEGlrGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     533.76|     173|     228|      12|     207|       4
---------------------------------------------------------------------------
   12-  207 (279.16/240.15)	GPERLQNLQIE.....KAWKALCR..SRVTSK.QYLRPGLTAPVlnhntycVPAQVSNSNN.INNV.VDFQRHGMTSHASIYPHKA...SGDVPCLNARQPNVVGAsmpHSSSHR.GPE..NHQTVHADSDKH.ANDNFldvlDDDEIMEnIDVDQIVMEHYHGTGTPEV...STSKHTPCT..PVGGGGDTTgpseNSLPHELCEtcihGFKLALCP
  235-  429 (254.60/167.42)	GPQRCENLRQErlhlnKQIQVLEKylHRLTQDgERWRSHLTAST.......TAAQVFQPETpVNTFpIDPARFNSQVHIGNEPGNSgtwSSMAPFSYTDRTSILSA...HTEREMfTPKlvDVNYMEGSSDKRwKSEDF....PWTKKLE.ANNRKVFGNHSFRPNQREVinaTMSGHNVFVlmPTGGGKSLT....YQLPALICP....GITLVVSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.36|      16|     601|     573|     588|       6
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  573-  588 (31.76/18.03)	RPNLWFSVMPKTKKCL
 1177- 1192 (31.61/17.91)	RPSCYFSTGPGSEQAM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23097 with Med34 domain of Kingdom Viridiplantae
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