<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23097

Description ATP-dependent DNA helicase Q-like 4A
SequenceMCARSIACIIQGPERLQNLQIEKAWKALCRSRVTSKQYLRPGLTAPVLNHNTYCVPAQVSNSNNINNVVDFQRHGMTSHASIYPHKASGDVPCLNARQPNVVGASMPHSSSHRGPENHQTVHADSDKHANDNFLDVLDDDEIMENIDVDQIVMEHYHGTGTPEVSTSKHTPCTPVGGGGDTTGPSENSLPHELCETCIHGFKLALCPEATTHLQEMKDRLITVSNELLDNAAELGPQRCENLRQERLHLNKQIQVLEKYLHRLTQDGERWRSHLTASTTAAQVFQPETPVNTFPIDPARFNSQVHIGNEPGNSGTWSSMAPFSYTDRTSILSAHTEREMFTPKLVDVNYMEGSSDKRWKSEDFPWTKKLEANNRKVFGNHSFRPNQREVINATMSGHNVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQANIPAAYLNASMEWAEQQEIFRELMSAICKYKLLYVTPEKIAKSDVLLRHLDSLYSRGSLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKYPNTPVLALTATATASVKEDVVQALGLVNCIIFQQSFNRPNLWFSVMPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQLTVLWKVVEIVLVPKPKHSTSGENRSSLPVMKWSFAPGTNLASGISFKIERESRQKLNEFSKELRSFRRVDMSGRNIGDEGLFFLSESLGYNQSAEEVNFSGNGITAAGLKAFDGILQANTVLKTLNLSGNAIGDDGAKVISASNISVYHYLSAFLEYTVSWAKVHKYGDRVLEIIESTIKEYQKANRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEGNCPIDNLFQEYTFKKFPAPAKVSKMSRSEVTPAKGSLLPEMMSTPSIDANTPSQNEVDLNLSAKLYAALRLLRTVLVKEAGEGVMAYHIFGNATLQHLSKRIPRTKEELLEINGIGKAKVHKYGDRVLEIIESTIKEYQKANRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEGLRGCFPGTTLDDKSCVGRPSCYFSTGPGSEQAMTWFWNWNLDLIHYVKDWVRVEQSWAPRLTRTWPAQNRGPKE
Length1233
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.524
Instability index47.21
Isoelectric point7.87
Molecular weight137295.39
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23097
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.27|      27|      27|     707|     733|       1
---------------------------------------------------------------------------
  687-  714 (42.17/30.21)	RSFRRVDMSGRNIGDEGLFfLSESLGYN
  715-  742 (39.35/27.63)	QSAEEVNFSGNGITAAGLKaFDGILQAN
  743-  766 (25.75/15.16)	TVLKTLNLSGNAIGDDGAKvISAS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.27|      14|      88|     795|     808|       2
---------------------------------------------------------------------------
  795-  808 (27.64/21.79)	LEIIESTIKEYQKA
 1041- 1054 (27.64/21.79)	LEIIESTIKEYQKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     460.57|     113|     243|     777|     915|       3
---------------------------------------------------------------------------
  785-  915 (232.65/202.85)	AKVHKYgdrvleiiestikeyqkaNRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEG..NC
 1031- 1163 (227.93/173.37)	AKVHKYgdrvleiiestikeyqkaNRNSSSSSNENTDAAKRRRGSTGIDSAVNDNDFAESAVQSKKRVTKVRNDRKGAPDTASISTYNGRCIDLDLDGCDMETEESNPKAKQKATGRVLPQWSRPGSEGlrGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     533.76|     173|     228|      12|     207|       4
---------------------------------------------------------------------------
   12-  207 (279.16/240.15)	GPERLQNLQIE.....KAWKALCR..SRVTSK.QYLRPGLTAPVlnhntycVPAQVSNSNN.INNV.VDFQRHGMTSHASIYPHKA...SGDVPCLNARQPNVVGAsmpHSSSHR.GPE..NHQTVHADSDKH.ANDNFldvlDDDEIMEnIDVDQIVMEHYHGTGTPEV...STSKHTPCT..PVGGGGDTTgpseNSLPHELCEtcihGFKLALCP
  235-  429 (254.60/167.42)	GPQRCENLRQErlhlnKQIQVLEKylHRLTQDgERWRSHLTAST.......TAAQVFQPETpVNTFpIDPARFNSQVHIGNEPGNSgtwSSMAPFSYTDRTSILSA...HTEREMfTPKlvDVNYMEGSSDKRwKSEDF....PWTKKLE.ANNRKVFGNHSFRPNQREVinaTMSGHNVFVlmPTGGGKSLT....YQLPALICP....GITLVVSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.36|      16|     601|     573|     588|       6
---------------------------------------------------------------------------
  573-  588 (31.76/18.03)	RPNLWFSVMPKTKKCL
 1177- 1192 (31.61/17.91)	RPSCYFSTGPGSEQAM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23097 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CLNARQPNVVGASMPHSSSHRGPENHQTVHADSDKHANDNFLDV
2) DVDQIVMEHYHGTGTPEVSTSKHTPCTPVGGGGDTTGPSENSLP
3) QKANRNSSSSSNENTDAAKRRRGSTGIDSAVNDND
4) VSKMSRSEVTPAKGSLLPEMMSTPSIDANTPSQ
5) YQKANRNSSSSSNENTDAAKRRRGSTGIDSAVNDND
93
147
806
935
1051
136
190
840
967
1086










Molecular Recognition Features






MoRF SequenceStartStop




NANANA