<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23094

Description mediator of RNA polymerase II transcription subunit 15a-like
SequenceMSHVNQSPVLPPLLPQNHQHKATLATTQGSASLSHTMSSVSGFSRSTVANADQTSHFQSISSVSQNFVSSSAGQGLTPERYANGQRQNWGRQQQPQAFISQQHQQQSQNTFVYQHELQQQILKQNVSHPSLLQAQIQQQHLQQQQQNFLHLNQVKSSQQPSMQMTSSLQSGQSMVHQMRPTVTQSASQPNLQKNQIQQCVPSSLKQHPQLVARQKKQAQPIIHQQSSSLQQECTSVPQQSILSSSQKLMGQHSSISDMQHSKLLGQQNSALNMKQQQKRLPGQKTSLISMQQAQPESSQRIISLHQQQQLRSQSNISGLKPQLQPHQQQQRQLIFGSHSSASNMQPNECTVPSSQQTKAVTQQRIQQPTVTFLQSQGRLSQYQSSQQQLMPQVQSQPPRLHQQLAMHQQPNLLQQEMQQRPQSSGALLQPQNLIEEQRPYIQSQRGLPEATSNSKWGNK
Length459
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.03
Grand average of hydropathy-0.966
Instability index90.21
Isoelectric point10.65
Molecular weight51625.94
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP23094
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     414.24|      79|      79|     101|     179|       2
---------------------------------------------------------------------------
   59-  106 (69.49/16.45)	SISS..............VSQNFVSSSAG.....QGL..T...PE.....RYANGQ.......RQN...W.................GRQQQPQ.........AFIS...........QQH...............QQQ
  107-  193 (131.43/41.01)	SQNTFVYQHELQQQI...LKQNVSHPSLL.....QAQ..I...QQ.....QHLQQQ.......QQN...FLHLNQVKSSQQPSMQMTSSLQSGQ.........SMVHQMRptvtqsasQPN...............LQK
  194-  296 (54.98/10.70)	NQ........IQQCVpssLKQ...HPQLVarqkkQAQpiI...HQ.....QSSSLQqectsvpQQS...IL......SSSQKLMGQHSSISDMQhskllgqqnSALNMKQ........QQKrlpgqktslismqqaQPE
  297-  360 (87.81/23.71)	SSQRIISLHQ.QQQL...RSQ..SNISGL.....KPQ..L....Q.....PHQQQQ.......RQL...IFGSHSSASNMQPNECTVPSSQQTK.........AV..................................
  380-  452 (70.54/16.87)	SQ....YQSS.QQQL...MPQVQSQPPRL.....HQQ..LamhQQpnllqQEMQQR.......PQSsgaLLQPQNLIEEQRPYIQSQRGLPEAT.........S...................................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23094 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSHVNQSPVLPPLLPQNHQHKATLATTQGSASLSHTMSSVSGFSRSTVANAD
2) NFLHLNQVKSSQQPSMQMTSSLQSGQSMVHQMRPTVTQSASQPNLQKNQIQQC
3) SAGQGLTPERYANGQRQNWGRQQQPQAFISQQHQQ
4) SILSSSQKLMGQHSSISDMQHSKLLGQQNSALNMKQQQKRLPGQKTSLISMQQAQPESSQRIISLHQQQQLRSQSNISGLKPQLQPHQQQQRQLIFGSHSSASNMQPNECTVPSSQQTKAVTQQRIQQPTVTFLQSQGR
5) SQYQSSQQQLMPQVQSQPPRLHQQLAMHQQPNLLQQEMQQRPQSSGALLQPQNLIEEQRPYIQSQRGLPEATSNSKWGNK
1
147
71
240
380
52
199
105
378
459










Molecular Recognition Features






MoRF SequenceStartStop




1) ALLQPQNLIEEQRPYIQSQRGL
2) RIISLH
426
300
447
305