<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23093

Description U-box domain-containing protein 35 isoform X1
SequenceMSPTEGATFPLVAVAIDKDKGSQNALKWALDNIVDRGQTITLIHVNTKHPAPGHQEDPTFAGSHSKDLFVPFRCFCTRKNVQCKDIILEDTEIAKAIIEFVSHAAIEKLVVGAPSKSGFGRRFRTTDVSTSISKGAPDFCTVYIISKGKVSSMRNAVRAAPAVSPFRAQIQNQTSIRSEHVDPHHPHGVRGEAALENWNVQSEREPIRSPFTRGTRVLTGKSYTESIGDSDISFVSGGRPSINRIFNQRSSNMSDGLDSSFEMQSPHKSVGGGFSCGTAFSSMSQDSTPSSLTMEDVEAEMKRLRLELKQTMDMYSTACKEALTAKQKAKELHHWKMEEERRLEEAHMAEEAALALAEKEKARCKAAIEAAEASKRIAKLEAHKRINAEMKALKEAEEKKRALDALAHTDVRYRKYTIEEIEVATEYFSEKRKIGEGGYGPVYKCYLEHTPVAIKVLRPDAAQGRSQFQQEVEILSCMRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFQQGNTPPIPWQHRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVAENVTQYRMTSTAGTFCYIDPEYQQSGMLGVKSDIYSLGIVLLQLITARPPMGLTHHVEHAIEKGTFTEVLDPSVIDWPVEEALSLANIALNCAELRRKDRPDLATIVLPELERLRNLAEENMQHCASFGSSHTSPIHSQVSFPDVLSPLPGQSGYESSITRSSASSMYGR
Length750
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.391
Instability index53.41
Isoelectric point6.72
Molecular weight83208.68
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23093
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.94|      28|      28|     228|     255|       1
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  211-  228 (23.35/10.95)	.....FTR.....G.....TRVLTGKSYTESIG
  229-  256 (51.50/32.65)	DSDISFVS.....GGRPSINRIFNQRSSNMSDG
  258-  284 (30.10/16.15)	DSSFEMQSphksvGGGFSCGTAF....SSMS..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.69|      26|      28|     397|     424|       2
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  397-  424 (33.57/36.43)	EEKKRALDALAHTDVrYRKYtIEEIEVA
  428-  453 (48.12/38.56)	FSEKRKIGEGGYGPV.YKCY.LEHTPVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.89|      30|      30|     300|     329|       3
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  300-  321 (26.38/12.90)	...................EMKRLRLELKQTMDMYSTACKE
  322-  352 (43.23/25.22)	ALTAKQKA..........kELHHWKMEEERRLEEAHMAEEA
  355-  395 (35.28/19.41)	ALAEKEKArckaaieaaeaSKRIAKLEAHKRINAEMKALKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     325.28|      97|     110|     517|     614|       4
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  517-  614 (166.05/116.52)	PPIPWQHRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVA..ENVTQYRMTSTAgTF..CYIDPEYQQSGMLGVKSDI
  629-  729 (159.23/106.85)	PPMGLTHHVEHAIEKGTFTEVLDPSVIDWPVEEALSLANIALNCAELRRKDRPDLATIVLPELErlRNLAEENMQHCA.SFgsSHTSPIHSQVSFPDVLSPL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.75|      27|     128|       2|      29|       5
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    2-   29 (44.66/36.53)	SPTEGA.TFPLVAVaIDKDKGS..QNALKWA
  131-  160 (38.09/25.76)	SISKGApDFCTVYI.ISKGKVSsmRNAVRAA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.70|      17|      22|     168|     186|       6
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  168-  186 (23.82/25.38)	AQIQNQtSIRSEHvDP.HHP
  193-  210 (26.87/17.14)	AALENW.NVQSER.EPiRSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23093 with Med32 domain of Kingdom Viridiplantae
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