<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23092

Description mediator of RNA polymerase II transcription subunit 15a-like
SequenceIMSWKKYSTELNEFNGRITLKIAQFHHEGVNAAATKQSKQFEKAKSCQSASRLILNLLHTSKSNINSDVMRKFPLLQNFMSNFINSRKNRSVPSQPQGHSQSMPQHLPSQVSQLQQHDNHVNEVQRINLPCSVASMQSAAAPSMQLGSMPLSTAVNVPTTQQNMANTLQPTPSLDPTKQGSLDSMKQGTVGLVQQDDVGSLQTTISASQQLHQVTQLPLHQMPQHQKNDVNELKGRQSSGIKSGLYQQHYPSGQHHNYSHQQLKAGVSFPISSPQNLQPTSPQVSQHSSPQKIDQNILLSSLPKEQTPSQSANSTFISSPYAPTTPSPVPGDPEKHFSISSLSNAVIIGHQQAFSSPQSHPITISTPGISASQLLEEFSSPDGCEANVVFTTLGKSNAKEQPINRLIKAVQSLSPKKLSSSVNDIRSVISMIDGIAGSAPGNGSRAA
Length447
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.04
Grand average of hydropathy-0.561
Instability index66.29
Isoelectric point9.48
Molecular weight48384.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23092
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     252.09|      43|      43|     103|     145|       1
---------------------------------------------------------------------------
  103-  128 (37.28/10.75)	....................M.PQHLP.SQVSQLQ.QHDNHVNEVQRIN
  129-  170 (55.54/19.18)	LPCSVASMQSAAAPSMQlgsM.PLSTA.VNVPTTQ.Q..NMANTLQ..P
  171-  204 (42.84/13.31)	TP.SLDPTKQGSLDSMK..........qGTVGLVQ.QDD..VGSLQ.TT
  205-  234 (40.80/12.37)	ISASQQLHQVTQLPLHQ...M.PQHQK............NDVNELK...
  269-  294 (37.36/10.79)	FPIS.................sPQNLQ.PTSPQVS.QHSSP....QKID
  302-  336 (38.27/11.21)	LPKEQTPSQSANSTFIS...S.P.YAP.TTPSPVPgDPEKH........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.55|      17|      23|     347|     368|       3
---------------------------------------------------------------------------
  352-  368 (31.49/22.08)	QAFSSPQS..HPITISTPG
  376-  394 (24.06/ 6.36)	EEFSSPDGceANVVFTTLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23092 with Med15 domain of Kingdom Viridiplantae
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