<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23090

Description pre-mRNA-processing protein 40C
SequenceMSTPAWLPQEAQASTTPKSQGLESPVGGPATSPPVSVMASTTVVSSVGGPATTAITSVTSPPTTDSGPSMTVTVSTMTSVGQPPPRGVVVNANTPSQDPVRAKFATPQGYVIPAPSFSYSVFPRVNSSSGSAQQSSSAPGLRLTPPMPASALQPPVPGQFLGNRPSFSYNVVSNANANSATGQQFQLTTAANQVNLQGGRFAPPTTAGSLQPPVPGQSVRPGANVPGAITPSCPAPMRLPLAVPTGTSDAVAREDGTTITTSVDSQSAQLSATVPSSFSTASGINPNANSSGILMPSTPSFTGHPGMAGLAGTPGLPGIPNSATVSSTVTSQPAATNSSPLRPMVPLPVSLPPTSTPVPVQQNIQQQFYAPYPSLPGTIPPPQALWLHPPQAGGMQRAPFLPYSGVLPTPFHLPLHGMPPPAIPLPSIQPPGVSTVANHGPAATTVGSSQSGSNVGIESPSIGIDHEKQANDPHKDGESTKNEEADAWTAHKTESGVIYYYNSVTGESTYDKPSSFKGEPENVTARSTPVSWEKLAGTNWTLVTTNDGRKYYYDAKNKVALFLALYVVSLQAVPSYSARKAIFEHYVRTRVEEERKEKRAAQKAAIDAFKQLLEEASEEIDHKTDYQTFKRKWGSDPRFGTLDRKERELLLNEKVKAAEDKMQAIRMAAVTSFKSMLRDNKDITTTSRWSRVKDNLRNDPRYKAVKHEERVTLFNEYISELKAAEEEAERSARAKRDEQEKLKERERETRKRKEREEQEMERVRLKVRRKEAVASYQALLVETIKDPKASWTESKPKLEKDPQGRATNLDLGQGDAEKLFRDHVKDLYERCARDFRLLLSEVITAEAAAQTRDDGKTILSSWSEAKRLLKPDPRYLKMPTKDREYLWHRYVEDMMRKQKAASDPKEKPDADGRNRTSSDFSRRSPRRSHGRG
Length932
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.649
Instability index55.42
Isoelectric point9.36
Molecular weight101086.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     230.78|      32|      56|     140|     171|       1
---------------------------------------------------------------------------
   27-   58 (33.49/10.49)	G.GPA.TSPPVSV.MaST...TVV......SSVGGPATTAITSV
  140-  171 (61.53/25.84)	GLRLT.PPMPASA.L.QP...PVP......GQFLGNRPSFSYNV
  198-  225 (47.21/18.00)	GGRFA.PPTTAGS.L.QP...PVP......GQSV..RP..GANV
  281-  310 (33.50/10.50)	ASGIN.PNANSSGiL.MP...STP.......SFTGH.PGMA.GL
  341-  376 (28.72/ 7.89)	.LRPM.VPLPVS..L.PPtstPVPvqqniqQQFYAPYPSLP...
  378-  403 (26.34/ 6.58)	....TiPPPQALW.L.HP...PQA......GG.MQRAPFLPY..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     333.12|      62|      62|     592|     653|       2
---------------------------------------------------------------------------
  592-  649 (89.69/55.04)	...........EEERKEKRAAQKAAIDAFKQLLEEASE.EIDHKT...DYQTFKRKWG.......SDP..RFGTLD..RKEREL
  650-  712 (70.49/41.66)	LLNE.....kvKAAEDKMQAIRMAAVTSFKSMLR.......DNK....DITTTSR.WSrvkdnlrNDP..RYKAVK..HEERVT
  713-  755 (39.20/19.86)	LFNEyiselkaAEEEAERSA..RAKRDEQEKLKERERE.............................T..R....K..RKER..
  756-  818 (62.82/36.32)	...E.....eqEMERVRLKVRRKEAVASYQALLVETIK...DPKA...SWTESKPKLE.......KDPqgRATNLDlgQGDAEK
  819-  885 (70.92/41.96)	LFRD.hvkdlyERCARDFRLLLSEVITA.....EAAAQtRDDGKTilsSWSEAKRLLK.......PDP..RYLKMP..TKDREY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.44|      15|      49|     488|     502|       4
---------------------------------------------------------------------------
  488-  502 (30.71/20.57)	WTAHKTESGVIYYYN
  540-  554 (30.72/20.58)	WTLVTTNDGRKYYYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.37|      12|      20|     416|     434|       5
---------------------------------------------------------------------------
  416-  429 (19.99/ 9.94)	HGmpPPAIPLPSIQ
  439-  450 (21.38/12.86)	HG..PAATTVGSSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.64|      13|      19|      78|      96|       8
---------------------------------------------------------------------------
   78-   96 (17.76/22.07)	TsvgqppPRGVVVNANTPS
  106-  118 (25.87/13.00)	T......PQGYVIPAPSFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.94|      10|      19|     504|     516|       9
---------------------------------------------------------------------------
  504-  516 (13.94/14.57)	VTGESTydkPSSF
  523-  532 (20.01/ 9.91)	VTARST...PVSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23090 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEEAERSARAKRDEQEKLKERERETRKRKEREEQEMERVR
2) FHLPLHGMPPPAIPLPSIQPPGVSTVANHGPAATTVGSSQSGSNVGIESPSIGIDHEKQANDPHKDGESTKNEEADAW
3) MSTPAWLPQEAQASTTPKSQGLESPVGGPATSPPVSVMASTTVVSSVGGPATTAITSVTSPPTTDSGPSMTVTVSTMTSVGQPPPRGVVVNANTPSQDPVRAKFATP
4) NSATGQQFQLTTAANQVNLQGGRFAPPTTAGSLQPPVPGQSVRPGANVPGAITPSCPAPMRLPLAVPTGTSDAVAREDGTTITTSVDSQSAQLSATVPSSFSTASGINPNANSSGILMPSTPSFTGHPGMAGLAGTPGLPGIPNSATVSSTVTSQPAATNSSPLRPMVPLPVSLPPTSTPVPVQQNIQQQ
5) PRVNSSSGSAQQSSSAPGLRLTPPMPASALQPPVPGQF
6) RKQKAASDPKEKPDADGRNRTSSDFSRRSPRRSHGRG
725
411
1
178
123
896
764
488
107
367
160
932










Molecular Recognition Features






MoRF SequenceStartStop




1) MPTKDREYLWHRYVEDMMRKQKAASD
878
903