<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23084

Description mediator of RNA polymerase II transcription subunit 24 isoform X2
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAANARPSWEVIHLLFHPFPDVENVFLCYNISPSLLEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECIGLCRALMSALNWLLRCAAFYTEKFKEMLDQVAAENQLKMCLERLEKILDSMKNRALIHIAKLEETSSWSTVEQSLVKLGENLNNLSSPQLRSQADECISLIKSIPTMLSAHSDQLNKTGFPTIHAVVLLEGTMNLTGETQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYPQGEKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTSLLLQECSKQGLLSETNMTNLTAKRTADREHAPRLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFTKHISGEGSKAASVRALLFDISFLMLCHVAQTYGSEVILSESSPTGEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLTFESIQITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYSENTLQFYNERSSLSLPCSVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTGVFTKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYSVFCLDMQQLTLTLLGHILPNLLTDSSKWHMLMDPPGKALAKLSVWCALSSYSSHNRGQASARQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDANILSSPTDRSMSSSLSASQLHTVSMRDPLNRVLANLFLLISSILGAKTAGTHTQFVQWFMEECVDCLEQGSRGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLSLPLGRRVAAKAIAAL
Length1028
PositionTail
OrganismAlligator sinensis (Chinese alligator)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae> Alligator.
Aromaticity0.07
Grand average of hydropathy0.008
Instability index48.07
Isoelectric point6.42
Molecular weight115253.08
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23084
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     285.56|      94|     242|      61|     163|       1
---------------------------------------------------------------------------
   61-  163 (150.21/131.22)	PDVENVFLCYNI....SPSLLEALLEQAMIGPSPNPLILSYLKYAISSqMVSYSTVLTAISKF....DDFSRDL.C.......VQSLLEIMDMFCDrlsChgkaeECIGL....C..RALMSALN
  293-  408 (135.35/95.31)	PLVEQLMMVKRMqripSPLFVLEIWKACFVGLIESPEGTEELKWTAFT.FLKIPQVLVKLKKYpqgeKDFTEDVnCafefllkLTPLLDKADQRCN...C.....DCTSLllqeCskQGLLSETN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.07|      59|     229|     657|     716|       2
---------------------------------------------------------------------------
  657-  716 (97.64/57.84)	HVRMLGLDEREKSlQMIRQLATPLYSENTLQFYNERS.SLSLPCS...VVIMSSILEHMCADVL
  882-  944 (88.43/48.40)	YISLFPLDDTQPS.KLMRLLSSNEEDANILSSPTDRSmSSSLSASqlhTVSMRDPLNRVLANLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     209.60|      74|     608|     164|     246|       4
---------------------------------------------------------------------------
  164-  246 (104.20/108.73)	WLlrCAAFytekFKEMLDQVAAENQLKmCLERLEKI..LDsMKNRALI...HIAK..LEETSSWSTVE....QSLVKLG..ENLNNLSSPQlRSQA
  781-  867 (105.40/77.18)	WF..CNNL....VKELLKETRKEHTLR.AVELLYSVfcLD.MQQLTLTllgHILPnlLTDSSKWHMLMdppgKALAKLSvwCALSSYSSHN.RGQA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23084 with Med24 domain of Kingdom Metazoa
Unable to open file!