<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23082

Description mediator of RNA polymerase II transcription subunit 24 isoform X5
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAANARPSWEVIHLLFHPFPDVENVFLCYNISPSLLEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECIGLCRALMSALNWLLRCAAFYTEKFKEMLDQVAAENQLKMCLERLEKILDSMKNRALIHIAKLEETSSWSTVEQSLVKLGENLNNLSSPQLRSQADECISLIKSIPTMLSAHSDQLNKTGFPTIHAVVLLEGTMNLTGETQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYPQGEKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTSLLLQECSKQGLLSETNMTNLTAKRTADREHAPRLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFTKHISGEGSKAASVRALLFDISFLMLCHVAQTYGSEVILSESSPTGEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLTFESIQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTGVFTKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYSVFCLDMQQLTLTLLGHILPNLLTDSSKWHMLMDPPGKALAKLSVWCALSSYSSHNRGQASARQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDANILSSPTDRSMSSSLSASQLHTVSMRDPLNRVLANLFLLISSILGAKTAGTHTQFVQWFMEECVDCLEQGSRGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLSLPLGRRVAAKAIAAL
Length1021
PositionTail
OrganismAlligator sinensis (Chinese alligator)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae> Alligator.
Aromaticity0.07
Grand average of hydropathy-0.001
Instability index47.51
Isoelectric point6.50
Molecular weight114606.37
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23082
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     422.65|     143|     193|     208|     400|       1
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  232-  400 (218.70/225.62)	ENLNNLSSPQLRSQADECISLIksIPTMLSAHSdqlnKT..GFPTIHAVVLLEGTMNL.......TGETQPLVEQLMMVKRMQRIPSPlfvlEIWKACFVgliespegtEELKWtAFTFL...KIPQ.....VLVKlKKYPQGEKDFTED..VNCAFEFLLKLTPlldkaDQRC.NCDCT...SL..LLQECSK
  430-  597 (203.95/126.99)	ENANIQPNPGLILRAEPTVTNI..LKTMDADHS....KSpeGLLGVLGHMLSGKSLDLllaaaaaTGKLKSFARKFIKLNEFTKHISG....EGSKAASV.........RALLF.DISFLmlcHVAQtygseVILS.ESSPTGEVPFFETwmQTCMPEEGKILNP.....DHPCfRPDSTkveSLvaLLNNSSE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.76|      25|      64|     126|     150|       2
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  126-  150 (46.82/36.65)	LCVQSLLEIMDMFCDR.LSCHGKAEE
  191-  216 (37.95/28.08)	MCLERLEKILDSMKNRaLIHIAKLEE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.36|      67|     607|      10|      85|       3
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   10-   85 (100.21/91.67)	ILQAWKERWSDYQwaiNMKKFFP..KGatwDILNLAANArPSWEVIHL.................LFHPFPDvENVFLCYNISPSLLEALLEQaM
  619-  704 (102.14/63.60)	ILNAWENGVLTFE...SIQKITDniKG...KVCSMAVCA.VAWLVAHVrmlglderekslqmirqLATPLYS.ENTLQFYNERVVIMSSILEH.M
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23082 with Med24 domain of Kingdom Metazoa
Unable to open file!