<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23079
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MGSVRLQAPVSRCGRTHQVLEHDGSPGQQLGEHGGQHGRRRSSRGPFVVAQWGEAGPACGKVRSIQLWREVLSSQVLSVADAVWGEAHGRLDCRDHQRPGDSLPPEAQRAGADVHGEPVPSAMPRGPGRHCLHGWGEHRGGHVGWEQHLPCAVLQGVRQRGEREVQDRHRDPALPLHALYHRPCPQGQVSGHHAPQIPGPGHVGAVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQTMAVFYGSSSQRPVDEQTIKRQRTAGPLVHFKAMQLSWTSLALVGIDNHGKLSMLRIIPSMGHALDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPSMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTVARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGAALGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCRDENHPTEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLIGYTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKTTAVKQWEQRWIKNCLCGGLWRRMPLSYF |
Length | 718 |
Position | Tail |
Organism | Alligator sinensis (Chinese alligator) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae>
Alligator.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.195 |
Instability index | 48.63 |
Isoelectric point | 8.92 |
Molecular weight | 80073.83 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP23079
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.19| 18| 19| 130| 148| 1
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130- 148 (37.41/23.94) HC..LHGWgEHRGGHVGWEQH
150- 169 (27.77/12.33) PCavLQGV.RQRGEREVQDRH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 123.51| 33| 78| 13| 46| 2
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13- 42 (46.21/31.19) ....................CgRTHQ.VLEHDGSPGQQLGEHGGQHGRRRS
43- 64 (33.70/16.94) SRGP......................fVVA.......QWGEAGPACGKVRS
73- 120 (43.60/24.31) SSQVlsvadavwgeahgrldC.RDHQ..RPGDSLPPEAQRAGADVHGEPVP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 375.05| 119| 132| 353| 475| 3
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353- 475 (195.19/151.54) FLLEYCMVTGYD...WW..DILLHVQPSMV.Q.NLVEKLHeEYMRQNAALQQVLSTRIVAMKASLCKLSSSTV.ARVCDYHAKL.FLIAISCTLKSLLRPHflNTPDKsPGDRLTEIC....SKITDIDIDKVMIN
481- 612 (179.85/124.83) FVLEMTTLQSLQqliQWvgDFVLYLLASLPnQgSPVRPGH.SFLRDGAALGMLRELMVVIRIWGLLKPSCLPVyTATSDTQDSMsLLFRLLTKLWLCCRDE..NHPTE.PDDTLIDECcllpSQLLIPNIDWLPIN
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