<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23078

Description mediator of RNA polymerase II transcription subunit 33A isoform X2
SequenceMKSVDSVLHLSSIFGVSQSEPGNLVVEFLFSIVWQLLDASLDDEGLLEFTADKKSRWATLYHDMELDRLDDNNSDKKTEHHEQLQNANTLMAVEMIGQFLQDKISSRILYLARQNLPAHWLCFTQRLQLLATNSLALRKSRTLSPEALLQLSSDSCMVLSREYKTNSQQKFQTVMSFEYLSSSASLCHGASHSALWIPLDLVLEDSMDGYQVSATSAIETISGLIKTLRAINGTSWHDTFLGLWLATLRLVQRERDPIDGPMPHLDTRLCMLLCIIPLVVGDLIEEEEEEGIAVDEEENGPFDCWKGKKVPGKCRNDLVSSLQVLGDYQSLLAPPQSVVVAANQAAAKAILFVSGITVGSAYFDCLNMTEMPVDCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGRINQIPQCMPAQVPGWSSFMKGAPLTSVMVNALVSSPATCLAELEKIFEIAIGGSEDEKISAAAILCGASLIRGWNIQEHTVHFILRLLSPPVPAENTEGNNYLINYAPILNVLFVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNISWTLTPGEEISAHAVFSNAFILLLKLWRFNRPPLEYGIGDVPTVGSQLTPEYLLLVRNSHLMSAGNVHKDRNRRRLSEIASLSSPNSVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPFHQIVEGLLNMMFRKINRGSQTTITSGSSSSSGPANEDASIGPKLPAWDILEAIPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIISYFSAEVTRGVWKPVYMNGTDWPSPAANLLNVEGQIRKILAATGVDVPSLASGDSSPATLPLPLAAFTSLTITYKVDKASERFLNLAGQTLESLAAGCPWPCMPIVASLWTLKAKRWTDFLIFSASRTVFLHNSDAVVQLLRSCFTATLGTNTSPLSSNGGVGALLGHGFKYHLCGGLCPVAPGILYLRAYRSIRDIVFLTEEIVSILMHSVREIVRSGLLRERLEKLKATKDGIRYGQASLAASMTRVKLAAALGASLVWISGGLMLVQLLIKETLPSWFISVQRFDQEEKCGGMVAMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKVLGTHMEFLASALDGKISLGCDSATWRAYVSGFVSLMVDCTPNWVLEVDVHVLKRLSNGLRQLNEEELALALLGVGGIGTMGAAAELIIDTGI
Length1197
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy0.194
Instability index44.36
Isoelectric point5.80
Molecular weight130239.92
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23078
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.31|      26|      42|     813|     843|       1
---------------------------------------------------------------------------
  813-  843 (34.15/35.25)	LAATGVDVPSLASGDSSPAtlpLPLAAftSL
  857-  882 (50.16/32.08)	LNLAGQTLESLAAGCPWPC...MPIVA..SL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.70|      15|     114|     257|     271|       2
---------------------------------------------------------------------------
  257-  271 (32.09/18.58)	PID..GPMPHLDTRLCM
  372-  388 (24.60/12.74)	PVDcsGNMRHLIVEACI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.32|      18|     283|     178|     196|       3
---------------------------------------------------------------------------
  178-  196 (29.94/22.45)	EYLSSSASLChGASHSALW
  464-  481 (33.39/19.66)	EKISAAAILC.GASLIRGW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.83|      17|     280|     305|     343|       4
---------------------------------------------------------------------------
  279-  295 (26.71/31.04)	VVGD...LIEEEEEEGIAVD
  324-  343 (22.12/ 8.02)	VLGDyqsLLAPPQSVVVAAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.29|      18|     138|     933|     951|       5
---------------------------------------------------------------------------
  933-  951 (32.80/24.14)	GGVGALLGhGF..KYH..LCGGL
 1067- 1088 (28.49/15.25)	GGMVAMLG.GYalAYFavLCGAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.06|      28|     303|     660|     727|       8
---------------------------------------------------------------------------
  220-  253 (45.31/10.92)	TISGLiktlraINGTSWHDTFLGLWLATLRLVQR
  670-  697 (51.75/67.53)	TLSGL......VHGTPFHQIVEGLLNMMFRKINR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.15|      18|      41|     548|     566|       9
---------------------------------------------------------------------------
  548-  566 (33.98/24.73)	PICEvFG.SCVPNISWTLTP
  592-  610 (31.17/17.70)	PPLE.YGiGDVPTVGSQLTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23078 with Med33 domain of Kingdom Viridiplantae
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