<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23076

Description mediator of RNA polymerase II transcription subunit 25 isoform X3
SequenceMSEFQLIVVVESTAAMGPYWETVLMDYLDKMIRSFGVNDSTGQKSLAPNVEFALITYNTHGCYSGCLVQRTGWTRDPDVFFLWLSSIPFNGGGFNDAAIAEGLSEALMMFPNSQSGGPNQQNVDMHKHCILIAASNPYPLQTPVYVPRPQNLEQSETIDSDSGNRLYDAEAVAKAFPQFSISLSVICPKQLPKIKAIYNAGKRSNRAADPPLEAKTPHFLILISEGFREARIALSRSGITSLPSNQSPVKVDTVSVMPVTGAPPTSMPSVNGSIANRQPVPAGNVAPPATVKVEQVPVTSMVSGPSFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIITNNENTQDTKPTVSMLQPLRPVNPTQANVSILNNLSQARQVMSSAALSGGTSKGIPSMGQTPVAMHMSNMISTGMTSSVPAAQNVFSSGQSGITSITSSGPLSVPAQVGQNPGLGSLTSNTSNLSSNSNIGISQPLGNLQGAVSIGQQASGMSQGNLSGPQMVQGGVPMSQNAMSGLGPSVVSSGNATMIPIPGMSQQQSGMQSIVNNTAVNKPLSQQTSGGMQSAQSKYVKVWEGGLSGQRQGQPVFITKLEGYRNSSASETLAANWPSVMQIVRLISQDHMNNKQYVGKADFLVFRAMNLHGFLVQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDMVVFKPQLSTQQQQQMQQQQQHQQMQSQQQHLPQLQQQQPLPHMQQQQLPQMQQQQQQLQQQQQLPQMQQQQQQLPQLQQQQQLPQVQQQQQLSQLQQQQHPQIQQQQQLPQLQQQIPQLQQQQQLPQLQQLQPQQQQMVGAGISQAYVQGPGRSQLVSQGQVSSQGTTNIGGGGFMS
Length861
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.05
Grand average of hydropathy-0.393
Instability index66.95
Isoelectric point9.03
Molecular weight92828.87
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23076
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.00|      32|      32|     709|     740|       1
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  429-  453 (35.64/ 6.93)	QSGITSITSSGPLS......VPA.QVGQN.PGL
  712-  740 (58.00/16.26)	QQHLPQLQQQQPLPHMQQQQLPQMQQQQQ....
  769-  796 (41.75/ 9.47)	.....QVQQQQQLSQLQQQQHPQIQQQQQlPQL
  797-  823 (52.61/14.01)	QQQIPQLQQQQQLP.....QLQQLQPQQQ.QMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.69|      17|      18|     525|     542|       2
---------------------------------------------------------------------------
  525-  542 (29.47/19.50)	NATMIPIPgMSQQQS.GMQ
  546-  563 (26.22/11.38)	NNTAVNKP.LSQQTSgGMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.18|      16|      49|     690|     705|       4
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  690-  705 (33.82/11.21)	QLSTQQQ.QQMQQQQQH
  741-  757 (29.36/ 8.72)	QLQQQQQlPQMQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.64|      23|      23|     242|     264|       5
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  118-  137 (26.70/ 8.65)	.P.NQQ.NVDMHKHCIL.IA..AS.NP
  242-  264 (40.99/16.78)	LPSNQS.PVKVDTVSVM.PV..TGAPP
  307-  332 (23.35/ 6.75)	FPHNSSvPRATSTSQGV.PSlqTSSPS
  341-  363 (25.60/ 8.02)	NNENTQ.DTK.PTVSMLqPL..RPVNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.59|      22|      22|     374|     395|       6
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  374-  393 (27.45/12.74)	...LSQARQVMS.S...AALSGGTSKG
  394-  417 (30.34/14.94)	IPsMGQTPVAMHmS...NMISTGMTSS
  506-  524 (18.79/ 6.14)	VP.MSQ..NAMS.GlgpSVVSSG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.20|      49|      50|     587|     636|       7
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  587-  636 (79.16/40.81)	FITKLEGYRNSSASETLAA..NWPSVMQIVrLISQDHMNNK..QY..VG...KADFLVF
  637-  687 (61.74/27.70)	RAMNLHGFLVQLQEKKLCAviQLPS..QTL.LLS...VSDK..AFrlIGmlfPGDMVVF
  833-  860 (25.30/ 7.55)	.....................QGPGRSQ...LVSQGQVSSQgtTN..IG...GGGFM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.88|      19|      27|       9|      34|       8
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    9-   27 (35.80/35.97)	VVESTA..AMGPYWETVLMDY
   37-   57 (28.08/11.62)	VNDSTGqkSLAPNVEFALITY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23076 with Med25 domain of Kingdom Viridiplantae
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