<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23072

Description mediator of RNA polymerase II transcription subunit 25 isoform X4
SequenceMSEFQLIVVVESTAAMGPYWETVLMDYLDKMIRSFGVNDSTGQKSSAPNVEFALITYNTHGCYSGCLVQRTGWTRDPDVFFLWLSSIPFNGGGFNDAAIAEGLSEALMMFPNSQSGGPNQQSVDMHKHCILIAASNPYPLQTPVYVPRPQNLEQSETIDSDSGNRLYDAEAVAKAFPQGKRSNRAADPPLEAKTPHFLILISEGFREARIALSRSGITSLASNQSPVKVDTVPVTPVTGAPPTSLPSVNGSIVNRQPVPAGNVAPPATVKVEQVPLTSVVSGPSFPHNSSVPRANSTSQGVPSLQTSSPSSVSQDIVTNNENTQDTKPTVSMLQPLRPVNPTQSILNNLSQARQVMSSAALSGGTSMGLPSMGQTPVAMHMSNMISSGMTSSVPAAQNVFSSGQSGITSITSSGPLSVPAQVGQNPGLGSLTSNTSNLSSTSNIGISQPLGNLQGAVSMGQQAPGMSQGNLSGPQMVQGGVPMSQSAMSGLGPSVVSSGNGTMIPTPGMSQQQSGMPPIVNNGAANMPLSQQTSGGMQSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRNSSASETLAANWPSVMQIVRLISQDHMNNKQYVGKADFLVFRAMNPHGFLVQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDMVVFKPQLSSQQQQQMQQQHQQMQSQQQHLPQLQQQQPLPHMQQQQLPQMQLPQMQQQQQQLQQQQQLPQMQQQQQQLQQQQLPQMQQQQQQLPQMQQQQQQLPQLQQQQQLPQLQQQQQQQQLSQLQQQQHPQIQQQQQLPQLQQQIPQLQPQQQQIVGAGMGQAYVQGPGRSQLVSQGQVSSQGTTNIGGGGFMS
Length855
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.04
Grand average of hydropathy-0.464
Instability index71.92
Isoelectric point8.25
Molecular weight92247.90
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     251.20|      43|      43|     690|     732|       1
---------------------------------------------------------------------------
  658-  687 (46.40/ 8.20)	DMVVFKPQLSSQQQQ.......QMQQQ...............HQQMQsQQQ.......H
  690-  732 (94.46/23.97)	QLQQQQPLPHMQQQQLPQMQLPQMQQQ...............QQQLQ.QQQQLPQMQQQ
  756-  788 (63.41/13.78)	..QQQQQLPQLQQQQ....QLPQLQQQ...................Q.QQQQLSQLQQQ
  792-  839 (46.92/ 8.37)	QIQQQQQLPQL.QQQIPQLQ.PQ.QQQivgagmgqayvqgpgRSQLV.SQGQ.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     117.52|      23|      23|     493|     515|       2
---------------------------------------------------------------------------
  362-  386 (27.64/ 7.65)	SG.GTSMGLPSMGQTPVAmhmSNMIS
  459-  478 (24.99/ 6.11)	MGQ....QAPGMSQGNLS..gPQMVQ
  498-  521 (37.48/13.39)	SGNGTMIPTPGMSQQQSG..mPPIVN
  522-  540 (27.42/ 7.52)	NGAANM...P.LSQQTSG...GMQSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     199.66|      49|     188|     214|     262|       3
---------------------------------------------------------------------------
  214-  258 (70.72/30.31)	............................................RSGITSLA....SNQSP...VKVDT.VP....VTPVTGA..P..P..TSLPSVNGSIVN.....RQPV...
  259-  304 (41.27/14.48)	..................................................PA....GNVAPpatVKVEQ.VP....LTSVVSG..PsfPhnSSVPRANST........SQGVPSL
  305-  359 (47.80/17.99)	Q...........................................TSSPSSVSqdivTNNEN...TQ.DT.KPtvsmLQPLRPV..N..P..TQ......SILNnlsqaRQVMSSA
  360-  451 (39.87/13.73)	AlsggtsmglpsmgqtpvamhmsnmissgmtssvpaaqnvfssgQSGITSIT....SS.GP...LSVPAqVG....QNPGLGSltS..N..TSNLSSTSNIGI.....SQPL..G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23072 with Med25 domain of Kingdom Viridiplantae
Unable to open file!