<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23071

Description probable mediator of RNA polymerase II transcription subunit 26c isoform X6
SequenceMDSNDFRSILESAGIDIWMLMDVAIAVASADHSDELRRRRDGIVERLYATSFLSSSRCPNCDIDDVRETEMQSNPSAEEEKDTCEVLFDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTTGEASTTVMADEDSPQDKIQQNEHRQIPDFADSSNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASRQRESNFELDKLASARKRLQENYKEPKSKERSR
Length275
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.04
Grand average of hydropathy-1.015
Instability index60.76
Isoelectric point5.35
Molecular weight31808.08
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23071
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.71|      18|      20|     195|     212|       1
---------------------------------------------------------------------------
  195-  212 (34.05/19.38)	EHRQI.P.DFADSSNPHNES
  216-  235 (23.66/11.57)	EHNNIePqQRKPKAIPHKES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.94|      22|      27|      64|      87|       2
---------------------------------------------------------------------------
   64-   87 (34.61/24.96)	DD....VRETEMQ.SNPsaEEEKDT.CEVL
   89-  116 (23.32/10.71)	DDeqkkILEIKEQlEDP..HQSKDSlLELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.74|      14|      15|     240|     253|       3
---------------------------------------------------------------------------
  240-  253 (23.03/14.41)	SASRQRESNFELDK
  256-  269 (22.71/14.11)	SARKRLQENYKEPK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23071 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GEASTTVMADEDSPQDKIQQNEHRQIPDFADSSNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASRQRESNFELDKLASARKRLQENYKEPKSKERSR
174
275










Molecular Recognition Features






MoRF SequenceStartStop




1) PQQRKPKAIPHKESPLKPSASRQRESNFELDKLASARKRLQENYKEPKSKE
222
272