<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23063

Description uncharacterized protein LOC106765876 isoform X3
SequenceMDNDNGRPNQEANMDTKDWRNGLPQESRERIFNQMVVYKPNGMDSLKKHSPGYGEKELHILHLDAKRFEEKIFTTATSWPDYLLKISSKIDVMETKSQDIRANPPNQVTNIKVEAKQLDTQRVIVPMPSPKKSLKRHYHQMNNDDGRPNQGTEGYSHWNGLHPETRQMNIDKMVDLLKRHLPDSGQDVLPELHMIAQRFEEKIFNAATSLPDYLLKISSKMHSMETGCQCTKANPPNQVTYIKVEAQQSDTQTVIVPTPSPNISLKRHQHQMDNDNERPNQGTETICHWRDGLHPEIRQINAIKIQEFLHDLQKIAQRFEEKIFTTATSQSDYLRKISLKMFTMETKPQRSMTNNPNQGYFWFSLNN
Length367
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-0.954
Instability index44.32
Isoelectric point8.26
Molecular weight42660.74
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23063
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.55|      16|      24|     129|     144|       1
---------------------------------------------------------------------------
  129-  144 (33.04/19.09)	SPKKSLKRHYHQMNND
  156-  171 (29.31/16.18)	SHWNGLHPETRQMNID
  260-  275 (32.20/18.44)	SPNISLKRHQHQMDND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     293.37|      50|     248|      58|     107|       2
---------------------------------------------------------------------------
   58-  107 (97.99/55.21)	LHILHLDAKRFEEKIFTTATSWPDYLLKISSKIDVMETKSQDIRANPPNQ
  189-  238 (100.40/56.71)	LPELHMIAQRFEEKIFNAATSLPDYLLKISSKMHSMETGCQCTKANPPNQ
  309-  358 (94.97/53.32)	LHDLQKIAQRFEEKIFTTATSQSDYLRKISLKMFTMETKPQRSMTNNPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.97|      30|     130|     108|     153|       3
---------------------------------------------------------------------------
  108-  153 (50.60/30.54)	VTNIKVEAKQLDTQRVIVPMPspkkslkrhyhqmnndDGRPNQGTE
  239-  284 (50.37/30.37)	VTYIKVEAQQSDTQTVIVPTPspnislkrhqhqmdndNERPNQGTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.20|      12|     130|      44|      55|       5
---------------------------------------------------------------------------
   44-   55 (23.46/16.67)	DSLKKHSPGYGE
  175-  186 (22.75/15.96)	DLLKRHLPDSGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23063 with Med15 domain of Kingdom Viridiplantae
Unable to open file!