<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23049

Description mediator of RNA polymerase II transcription subunit 33A isoform X7
SequenceMESALEWNDEVREGVLKRLKLWQQCSKKPAAALVTELVEHLNTLGIALPSPELGELLVSQICFDNNHPWMWKFTHHALSSRLLFPLQILSLLASNAIPHRHSHPHSFALFLPLLSQYAFSFQSTPSLSCNRKIVSSVDSALRISETYKVRDLEIGHVFVLFFYEIVISLLDCVLIDWGFQVTFSEKSSLVAAGKGEDCMDIDRNVTQNFEKSEYREQIRKRNSFTALEVLERLTESRKATILLQSVLLNMPEKFNCLQQRLQFLESLELASSELKLVNQVLTKVSANMRGVSHFDYSLSKHRLVGTLINMGSCKIPLKCNYRFCQSPCWVPFDIYMENAMDSRQIPTKSAIDVLTEGIKTLQMLNQASWQETFLALWLSALRLVQRERDPPEGPIPHLVARLCVLLCIVPLAIANVLRDASEHNLSSVQVSMESEYTHEMKSDDSVKRELMSSVQVLGHFSGLLCPPTLVIDAANQAARKAASFIYNSMNGKGESGTGIHANANTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVLSLSDSSPPEKSPWSMFMEGTPLNNTLINSLTMTPASSLAEIEKLYYIALNGSDVERPAAAKILCGASLGHGWYIQEHVIHHVIKLLASPLPPSHAGSRSLLVDNMPMLCAVLRGASSVDTVHILSLHGVVPTVAAALLPLCEAFGSIKPTSNSTGDESSTTYMAFSLAFLFLIRLWKFCRPPLDLCITELGVAVGGLEYILSLHNHRVMYSQDKRKSNPNLPESASVKPVYIDSFPKLRALYCQYKSCVASALSGISTGNSIHQTANMILSMIYQKITKVGISSSNSSSPTSSNACSSLINSGEDAFQRPMLPGWEVLEALPFVLESILTACAHGRISSRELTTGLRDLVDFLPASLAAIIDYFSSEVTRGVWKLVPMNGTDWPSPAALLPSIELEINAILTHVGVEVPNCSSGGSHSSYVDCSSILYIK
Length971
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy0.086
Instability index42.86
Isoelectric point6.45
Molecular weight107096.36
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23049
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.47|      19|      25|     796|     814|       1
---------------------------------------------------------------------------
  796-  814 (34.84/21.78)	GISTGNSIHQT.ANMILSMI
  822-  841 (29.63/17.36)	GISSSNSSSPTsSNACSSLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.68|      68|      77|     298|     368|       2
---------------------------------------------------------------------------
  298-  368 (113.65/91.78)	LSKHRLVGTLINMGSCKIPlKCNYRFCQSPCWVPFDIymENAMDSRQIPTKSAIDVLTEGIKTLQMLNQAS
  378-  445 (116.02/81.56)	LSALRLVQRERDPPEGPIP.HLVARLCVLLCIVPLAI..ANVLRDASEHNLSSVQVSMESEYTHEMKSDDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.51|      32|      82|     532|     563|       3
---------------------------------------------------------------------------
  531-  552 (31.41/16.37)	..........F.................................................WPGYVST.SVLS.....LSDSSPPEKS
  553-  636 (27.95/13.67)	PWSMFMEGTPLnntlinsltmtpasslaeieklyyialngsdverpaaakilcgaslghgW..YIQE.HVIHhviklLASPLPPSHA
  638-  672 (30.15/15.39)	SRSLLVDNMPM...........................................lcavlrGASSVDTvHILS.....LHGVVP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.69|      55|     127|     719|     776|       5
---------------------------------------------------------------------------
  719-  776 (89.17/71.36)	FCRPPL.DLCITELGVAVggLEYILSLHNHRVMYSQDKRKSNPNLPE..SASVKPVyIDSF
  848-  905 (86.52/57.16)	FQRPMLpGWEVLEALPFV..LESILTACAHGRISSRELTTGLRDLVDflPASLAAI.IDYF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.69|      15|      25|     171|     185|       6
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  171-  185 (29.45/21.46)	DCVLIDWGFQVTF..SE
  197-  213 (23.24/15.31)	DCMDIDRNVTQNFekSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.60|      25|      29|      58|      86|       8
---------------------------------------------------------------------------
   58-   86 (38.74/40.06)	VSQICFDNNHPwmWKFTH.HALSsrLLFPL
   88-  113 (37.86/23.28)	ILSLLASNAIP..HRHSHpHSFA..LFLPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23049 with Med33 domain of Kingdom Viridiplantae
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