<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23045

Description mediator of RNA polymerase II transcription subunit 33A isoform X9
SequenceMESALEWNDEVREGVLKRLKLWQQCSKKPAAALVTELVEHLNTLGIALPSPELGELLVSQICFDNNHPWMWKFTHHALSSRLLFPLQILSLLASNAIPHRHSHPHSFALFLPLLSQYAFSFQSTPSLSCNRKIVSSVDSALRISETYKVRDLEIGHVFVLFFYEIVISLLDCVLIDWGFQVTFSEKSSLVAAGKGEDCMDIDRNVTQNFEKSEYREQIRKRNSFTALEVLERLTESRKATILLQSVLLNMPEKFNCLQQRLQFLESLELASSELKLVNQVLTKVSANMRGVSHFDYSLSKHRLVGTLINMGSCKIPLKCNYRFCQSPCWVPFDIYMENAMDSRQIPTKSAIDVLTEGIKTLQMLNQASWQETFLALWLSALRLVQRERDPPEGPIPHLVARLCVLLCIVPLAIANVLRDASEHNLSSVQVSMESEYTHEMKSDDSVKRELMSSVQVLGHFSGLLCPPTLVIDAANQAARKAASFIYNSMNGKGESGTGIHANANTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVLSLSDSSPPEKSPWSMFMEGTPLNNTLINSLTMTPASSLAEIEKLYYIALNGSDVERPAAAKILCGASLGHGWYIQEHVIHHVIKLLASPLPPSHAGSRSLLVDNMPMLCAVLRGASSVDTVHILSLHGVVPTVAAALLPLCEAFGSIKPTSNSTGDESSTTYMAFSLAFLFLIRLWKFCRPPLDLCITELGVAVGGLEYILSLHNHRVMYSQDKRKSNPNLPESASVKPVYIDSFPKLRALYCQYKSCVASALSGISTGNSIHQTANMILSMIYQKITKVGISSSNSSSPTSSNACSSLINSGEDAFQRPMLPGWEVLEALPFVLESILTACAHGRISSRELTTGLRDLVDFLPASLAAIIDYFSSEVTRGVWKLVPMNGTDWPSPAALLPSIELEINAILTHVGVEEVHR
Length952
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy0.079
Instability index42.99
Isoelectric point6.45
Molecular weight105232.30
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23045
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.47|      19|      25|     796|     814|       1
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  796-  814 (34.84/17.33)	GISTGNSIHQT.ANMILSMI
  822-  841 (29.63/13.82)	GISSSNSSSPTsSNACSSLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.68|      68|      77|     298|     368|       2
---------------------------------------------------------------------------
  298-  368 (113.65/70.12)	LSKHRLVGTLINMGSCKIPlKCNYRFCQSPCWVPFDIymENAMDSRQIPTKSAIDVLTEGIKTLQMLNQAS
  378-  445 (116.02/62.30)	LSALRLVQRERDPPEGPIP.HLVARLCVLLCIVPLAI..ANVLRDASEHNLSSVQVSMESEYTHEMKSDDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.92|      16|      29|     740|     755|       3
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  740-  755 (30.54/22.04)	YILSLHNHRVMYSQDK
  772-  787 (31.38/22.86)	YIDSFPKLRALYCQYK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.19|      15|      25|     171|     185|       4
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  154-  164 (13.51/ 6.03)	....IGHVFVLFF..YE
  171-  185 (29.45/22.03)	DCVLIDWGFQVTF..SE
  197-  213 (23.24/15.80)	DCMDIDRNVTQNFekSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.60|      25|      29|      58|      86|       5
---------------------------------------------------------------------------
   58-   86 (38.74/35.68)	VSQICFDNNHPwmWKFTH.HALSsrLLFPL
   88-  113 (37.86/20.72)	ILSLLASNAIP..HRHSHpHSFA..LFLPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.15|      14|      26|     575|     588|       6
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  575-  588 (24.64/16.20)	PASS..L..AEIEKLYYI
  598-  615 (17.51/ 9.26)	PAAAkiLcgASLGHGWYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.22|      53|     353|     515|     573|       7
---------------------------------------------------------------------------
  446-  504 (78.53/43.47)	VKRELM.SSVQvlgHFSGLLCPPTLVIDAANQAARKAASFIynsMNGKGESGTGIHANAN
  520-  573 (89.68/49.83)	IARNLMdTSVY...FWPGYVSTSVLSLSDSSPPEKSPWSMF...MEGTPLNNTLINSLTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.73|      21|      31|     227|     247|       8
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  227-  247 (31.19/22.14)	LEVLERLTESRKATILLQSVL
  261-  281 (31.54/22.48)	LQFLESLELASSELKLVNQVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.45|      17|     692|      19|      37|       9
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   19-   37 (26.94/25.01)	LKLWQQCskKPAAAL.VTEL
  714-  731 (29.51/19.82)	IRLWKFC..RPPLDLcITEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.43|      42|     220|     630|     679|      10
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  637-  679 (68.15/72.33)	GSRSlLVDNMPM.LCAVLRGASSVDT...VHILSLHGVVPTVAAALL
  886-  931 (67.29/46.11)	GLRD.LVDFLPAsLAAIIDYFSSEVTrgvWKLVPMNGTDWPSPAALL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23045 with Med33 domain of Kingdom Viridiplantae
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