<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23039

Description mediator of RNA polymerase II transcription subunit 33A isoform X2
SequenceMDIDRNVTQNFEKSEYREQIRKRNSFTALEVLERLTESRKATILLQSVLLNMPEKFNCLQQRLQFLESLELASSELKLVNQVLTKVSANMRGVSHFDYSLSKHRLVGTLINMGSCKIPLKCNYRFCQSPCWVPFDIYMENAMDSRQIPTKSAIDVLTEGIKTLQMLNQASWQETFLALWLSALRLVQRERDPPEGPIPHLVARLCVLLCIVPLAIANVLRDASEHNLSSVQVSMESEYTHEMKSDDSVKRELMSSVQVLGHFSGLLCPPTLVIDAANQAARKAASFIYNSMNGKGESGTGIHANANTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVLSLSDSSPPEKSPWSMFMEGTPLNNTLINSLTMTPASSLAEIEKLYYIALNGSDVERPAAAKILCGASLGHGWYIQEHVIHHVIKLLASPLPPSHAGSRSLLVDNMPMLCAVLRGASSVDTVHILSLHGVVPTVAAALLPLCEAFGSIKPTSNSTGDESSTTYMAFSLAFLFLIRLWKFCRPPLDLCITELGVAVGGLEYILSLHNHRVMYSQDKRKSNPNLPESASVKPVYIDSFPKLRALYCQYKSCVASALSGISTGNSIHQTANMILSMIYQKITKVGISSSNSSSPTSSNACSSLINSGEDAFQRPMLPGWEVLEALPFVLESILTACAHGRISSRELTTGLRDLVDFLPASLAAIIDYFSSEVTRGVWKLVPMNGTDWPSPAALLPSIELEINAILTHVGVEVPNCSSGGSPVMLPLPMAALVSLSITFKLDKSLEYMHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRQNNESVAQLLRSCFTSFLGTLSVSTSKLTSECGVNGLLGSTITAPGAYPYVAPGFLFLRSCRNIHNVQYVNDIIVGLVTEYSNELAGRRSDAGSRHIKSNESSLSLAAQSAKEVATLGASLLCAAGGMLLVQELYKETIPTWLLSSRDMKKNNDSVASYILEGYAMAYLLILSGSIIWGVGTKLPPGTFSRRSRTIEVHLDFLAEVMEKKISLSCNPITWKTYVCCFVGFMVSLAPVWIQEVRVDTLKKLALGLSRWNEHEIALSLLHRGGLAAMGALAELVTVVESERMLPPS
Length1128
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy0.124
Instability index46.82
Isoelectric point7.70
Molecular weight123343.36
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23039
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     360.98|     112|     127|     338|     461|       1
---------------------------------------------------------------------------
  308-  413 (119.92/75.97)	.......................KAGGnlRHLIVEaciarNL.M.DTSVY.FWPGYVS...TSVLSLSDSSPPEKSPWSMFME....................GT..PLNNTLIN.SLTMTPASSLAEiekLYYIALngSDVERPAAAkiLC....GASLGH
  414-  539 (167.89/100.40)	GWYIQEHVIHhviKLLASPLPpsHAGS..RSLLVD.....NMPM.LCAVLRGASSVDT...VHILSLHGVVPTVAAALLPLCE..................afGSikPTSNSTGDeSSTTYMAFSLAF...LFLIRL..WKFCRPPLD..LCitelGVAVGG
  668-  760 (73.17/33.16)	LESILTACAH...GRISSREL..TTGL..RDL.VD.....FLPAsLAAIIDYFSSEVTrgvWKLVPMNGTDWPSPAALLPSIEleinailthvgvevpncssgGS..P......................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.47|      52|     149|     801|     858|       2
---------------------------------------------------------------------------
  801-  858 (81.37/74.48)	CPWPSMPIIGSLWAQKVRRWhnfiVVSgSRSVfRQNNESVAQ.LLRSCFTSFLGTLSVS
  957- 1009 (86.10/57.33)	CAAGGMLLVQELYKETIPTW....LLS.SRDM.KKNNDSVASyILEGYAMAYLLILSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.15|      68|      77|     100|     170|       3
---------------------------------------------------------------------------
  100-  136 (51.09/29.30)	.........................................LSKHRLVGTLINMGSCKIPlKCNYRFCQSPCWVPFDI
  139-  215 (105.81/63.93)	ENAMDSRQIPTKSAIDVLTEGIKTLQMLNQASwqetflalwLSALRLVQRERDPPEGPIP.HLVARLCVLLCIVPLAI
  216-  247 (33.25/11.19)	ANVLRDASEHNLSSVQVSMESEYTHEMKSDDS..............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.92|      16|      30|     542|     557|       4
---------------------------------------------------------------------------
  542-  557 (30.54/22.38)	YILSLHNHRVMYSQDK
  574-  589 (31.38/23.22)	YIDSFPKLRALYCQYK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.47|      19|      24|     598|     616|       6
---------------------------------------------------------------------------
  598-  616 (34.84/20.38)	GISTGNSIHQT.ANMILSMI
  624-  643 (29.63/16.22)	GISSSNSSSPTsSNACSSLI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23039 with Med33 domain of Kingdom Viridiplantae
Unable to open file!