<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23036

Description pre-mRNA-processing protein 40C isoform X2
SequenceMASPAWLPQEAKPPVSGETSLPMASPAPSSAHATPSTAPAPATPFPHGVLQNANVSGSPQQSSTHNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQSGGAFSSSQQHTQSSGKISESVAQDVTKLSSAASTPHSVPAHTSTMIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPGNPGPPGLTSSSIISINTAVPSTGTDSSSAALPRPNMPISAIASDPTAPLKGLPYPSMPSMAAPPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGVTLPAVPIPDSQPPGVTPVSGGSGTSTLASSNQPRGTTALQTEAISGPADDKKKLNAVVTQNEGAANNDQLEAWTAHKTEAGIIYYYNALTGESTYDKPAGFIGEPHQVSAQPTPVSMMDLPGTDWLSVSTSDGKKYYYNNRTKTSCWQIPNEVSELKKKQDGDVAKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPVPSVQTGSESNGSKAIESTSKGMQADNSKDKQKDTNGATNVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGYKQLLDEASEDINYNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKTQAMRAAAAASFKSMLKERGDISFNSRWSRVKESLRDDPRYKSVRHEDREGLFNEYLSELKAAEYATERETKAKREEQVIGSVLSS
Length786
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.06
Grand average of hydropathy-0.637
Instability index56.54
Isoelectric point6.71
Molecular weight84380.14
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23036
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     267.90|      65|      66|     630|     694|       1
---------------------------------------------------------------------------
  574-  640 (80.81/53.90)	IIQFKEMLKE..RGVA......PF.SKWEKelpkivfDPRFKAIPSYSARRSLFEHYVKTR.....aeeeRKEKRAAQKAA
  641-  708 (101.01/69.30)	IEGYKQLLDEASEDINYNTDYQTFRKKWGN.......DPRFEALDRKEQEHLLNERVLPLK.....kaaeEK.TQAMRAAA
  709-  778 (86.08/57.92)	AASFKSMLKERG.DISFNSRWSRVKESLRD.......DPRYKSVRHEDREGLFNEYLSELKaaeyatereTKAKREEQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     511.29|      96|      96|      74|     169|       2
---------------------------------------------------------------------------
   16-   53 (29.70/ 6.55)	.........................................................SGETSLPMASPAPSSAHATPSTAPA..PATPFPHG.VLQNA
   74-  169 (167.89/75.22)	VNPVVFQPPVPGVSSHAALSFSYNVPQSGGAFSSSQ.QHTQSSGKISESVAQDVTKLSSAASTPHSVPAHTSTMIMPPSDPNYRPTTSWMPT.AMSFP
  173-  253 (123.15/52.99)	VMPTPGNPGPPGLTSSSIISINTAVP.STGTDSSSA.ALPRPNMPIS.AIASDPTAPLKGLPYP.SMP....SMAAPPQGL.......WLQApQMS..
  255-  325 (102.05/42.50)	....VFRPPY..LQYPAPFPGPFPFPARGVTLPAVPiPDSQPPG.................VTPVSGGSGTSTL.ASSNQP..RGTTALQTE.AISGP
  331-  399 (88.51/35.77)	...................KLNAVVTQNEGAANNDQ.LEAWTAHKTEAGIIYYYNAL.....TGESTYDKPAGFIGEPHQVSAQPTPVSM....MDLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.35|      38|      61|     421|     458|       3
---------------------------------------------------------------------------
  421-  458 (66.13/40.29)	KTSCWQIPNEVSEL.KKK.QD.GDVAKDQLMSVPNTNVLSD
  482-  522 (48.92/27.80)	KPSNLQSPSSALDLiKKKlQDsGTPVTSSSIPVPSVQTGSE
  532-  557 (35.30/17.90)	TSKGMQADN..SKD.KQK..D.TNGATN....VSDT.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23036 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPNEVSELKKKQDGDVAKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPVPSVQTGSESNGSKAIESTSKGMQADNSKDKQKDTNGATNVSDTSSDSEDEDSGPSKEECII
2) MASPAWLPQEAKPPVSGETSLPMASPAPSSAHATPSTAPAPATPFPHGVLQNANVSGSPQQSSTHNVIKSNSTVNPVVFQPP
3) MSFPLHPVMPTPGNPGPPGLTSSSIISINTAVPSTGTDSSSAALPRPNMPISAIASDPTAPLKGLPYPSM
4) RGVTLPAVPIPDSQPPGVTPVSGGSGTSTLASSNQPRGTTALQTEAISGPADDKKKLNAVVTQNEGAANNDQLEA
5) VPQSGGAFSSSQQHTQSSGKISESVAQDVTKLSSAASTPHSVPAHTSTMIMPPSDPNYRPTTSWM
427
1
166
276
98
575
82
235
350
162










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
495
500