<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23013

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAVNIKKNFPKGATWDYLNFAEALMEQAMIGPSPNPLILSYLRYAISSQMVSYSSVLTAISKFDGFSRELCVKSLLEIMDMFCHRLNCHGKAEECIGLCRALLGVVVWLLQGCAFYCDQLRELGPLASTEAILRACQERLYGLMSSTKNKALVHIARLEDPGSWGNVEETMIVVTDGLCNVPNETLRTSIEETLALVKSIPLMLSVQSEPPAHASFPSVHAFIMLEGTMNLTGETQPLVEQLMMIKRMQRIPGPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDKGQDFTEDVNIAFQCLLKLTPLLDKADQRCNCDCLGMLLQECNKLGLLSDSNTEGLTSKRNEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRAQLFDISFLMLCHVVQTYGSEVILSDPSPSVETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYAENTMQFYNERVVIMSSIMEHMCADVFQQTGALLRSPIEGQEPIAYRNLLPSKEPIHQSLSKQFQVVLRKGWVDSRALHLFESLLNMGGVFWFTNNLIKELLKETRQEWASRVVELLYSIFCLDMQQITLTLLGTILPNLLTDSAHWHSLADPPGKALAKLSVWCALSSYSSHHKGPFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSPSQLHTVNMRDPLNRVLGEPVLHHI
Length909
PositionTail
OrganismPoecilia reticulata (Guppy) (Acanthophacelus reticulatus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.07
Grand average of hydropathy-0.086
Instability index48.49
Isoelectric point6.23
Molecular weight101882.07
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23013
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.07|      15|      17|     273|     288|       1
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  273-  288 (24.94/24.17)	IPGPLFVLEI.WKAcFT
  291-  306 (24.13/15.68)	IESPEGTEELkWTA.FT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.07|      11|      17|     141|     151|       2
---------------------------------------------------------------------------
  141-  151 (19.13/10.50)	QLRELGPLAST
  159-  169 (19.94/11.25)	QERLYGLMSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     211.97|      69|     222|     182|     256|       3
---------------------------------------------------------------------------
  182-  256 (108.30/76.58)	DPGSWGNVEETmivVTDGLCNVPNETLRtSIEETLALV......KSIPLMLSVQSEPPAHASFPsvHAFIML.EGTMNLTGE
  405-  480 (103.67/58.29)	NPGLILRAEPT...VTNILKTVDADHSK.SPEGLLGVLghmlsgKSLDLLLAAAAATGKLKSFA..RKFIKLnEFPKHISGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.32|      20|     222|     572|     591|       4
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  572-  591 (36.05/23.18)	KWHEICLSTPAAILEVLNAW
  772-  786 (17.74/ 7.46)	.....CLDMQQITLTLLGTI
  796-  814 (34.53/21.87)	HWHSL.ADPPGKALAKLSVW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23013 with Med24 domain of Kingdom Metazoa
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