<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23007
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MELAYVCEWEKRPKSTHCPSIPLVCSWSCRNLVAFTTDLKSEDDDKNVSHMIHIIDTEHPWDVFSINSGHTEVISCLEWDQSGSRLLSADGDGQIKCWSMSDHLVNSWESVLSSSLDGDPIIALSWLHNGVKLALHVEMSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTVSLLKPGGALLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVVVSVVSEKCRIDTELLPSLFLRCTTDPLRREKYPAVTHLKFLTRENSEQVLLCASNQNGSIVECWSLRKEGLPVNNIFQHCSPVVGEKQPTILKWRILTTTSDLERVSAVALPKLPISISNTELKFCPGLGLALAFHDGSIQILHRLSLHTMGVFYGASSAQRPGDESAIKRQRTAGPTVHFKALQFSWTSLALAGVDNHGKLHMLRVSPSMGQVLEMNTTLRHLLFLLEYCMVTGYDWWDVLLHVQPSMVHNLVEKLHEEYMRQNQALQQVLATRIVAVKASLCKLSTATAARACDFHAKLLLIAISSTLKSLLRPHVLNTPDKSPGDRLTEICAKNTDTDIDKVMLNLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLLANLPNQGSMVRPGFGFMRDGASLGMLREMLVMIRIWGLLKPGCLPTFTATSDNQDSMLLLFRLLTKLWLCSRDDGAPQDPDDSLIDECCLLPSQLLVPSMDWLPVNDGVMVKLQGKHPLRLQFGKASSLPSNAPPTPLEVFNRTPGSQRMDNLRCVHMGVCPTEESKACTRCGCVTMLRSPNKTNAMKQWEQRWIKNCLCGGLWRRIPPTFT |
Length | 826 |
Position | Tail |
Organism | Maylandia zebra (zebra mbuna) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata>
Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids>
Pseudocrenilabrinae> Haplochromini> Maylandia> Maylandia zebra complex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.028 |
Instability index | 45.94 |
Isoelectric point | 7.71 |
Molecular weight | 91550.14 |
Publications | PubMed=25186727
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP23007
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 174.69| 56| 79| 209| 273| 1
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209- 270 (79.79/71.17) AFTGGGNIVVAATDGSSSSPV.QFYKVVVSVVSEKcriDTELLPSLFLRCTTDpLrrEKYPAV
288- 344 (94.91/55.05) ASNQNGSIVECWSLRKEGLPVnNIFQHCSPVVGEK...QPTILKWRILTTTSD.L..ERVSAV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 119.16| 32| 45| 61| 93| 2
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28- 46 (19.44/ 7.33) ...............SCRNLVAFTTDL.KSEDDDK
61- 93 (54.58/40.10) WD.VFSiNSGHTEVISCLEWDQSGSRL.LSADGDG
108- 141 (45.14/27.91) WEsVLS.SSLDGDPIIALSWLHNGVKLaLHVEMSG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 136.16| 29| 31| 659| 687| 4
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626- 655 (42.91/18.11) PGFGFMRDGASlGMLREMLVM..IRIWGLLKP
659- 687 (48.31/21.12) PTFTATSDNQD.SMLLLFRLL..TKLWLCSRD
691- 721 (44.94/19.24) PQDPDDSLIDE.CCLLPSQLLvpSMDWLPVND
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.62| 31| 101| 424| 454| 5
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424- 454 (53.89/39.63) TSLALAGVDNHGKLHMLRVSPSMGQVLE...MNT
523- 556 (44.73/31.54) TATAARACDFHAKLLLIAISSTLKSLLRphvLNT
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