<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23006

Description Uncharacterized protein
SequenceMASQQPQPGGSMSQAGLQQQSASMQQQQQQQQQQQQQQQQQQQQQQLSQQQDFDPVQRFKMLIPQLKESLQNVMRIASLNLAYNTTIDNGIKTSDTSVTLQRFDKSLEEFYALCDQLELCLRLAYECLSQSIDSAKHSPNLVPTATKPDTVQTESMSYAQYLGMIKSQISCAKDIHNALLECSKKIAGKGQPQGII
Length196
PositionTail
OrganismMaylandia zebra (zebra mbuna)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Haplochromini> Maylandia> Maylandia zebra complex.
Aromaticity0.05
Grand average of hydropathy-0.696
Instability index80.55
Isoelectric point6.09
Molecular weight21998.54
Publications
PubMed=25186727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
eye photoreceptor cell development	GO:0042462	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23006
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.92|      16|      16|      18|      33|       1
---------------------------------------------------------------------------
   27-   42 (30.37/ 8.76)	QQQQQQQQQQQQQQQQ
   43-   58 (28.55/ 7.82)	QQQQLSQQQDFDPVQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.71|      21|      41|      79|     100|       2
---------------------------------------------------------------------------
   79-  100 (30.22/23.02)	LNLAYNtTIDNGIKTSDTSVTL
  121-  141 (36.50/23.17)	LRLAYE.CLSQSIDSAKHSPNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23006 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MASQQPQPGGSMSQAGLQQQSASMQQQQQQQQQQQQQQQQQQQQQQLSQQ
1
50










Molecular Recognition Features






MoRF SequenceStartStop




1) MASQQPQPGGSMSQAGLQQQSASMQQQQQQQQQQQQQQQ
1
39