<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23004

Description Uncharacterized protein
SequenceMKMVNLKQAILQAWKDRWSDYQWAINIKKNFPKGVTWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLMAISKFDDFSRELCVKSLLEIMDMFCHRLSCHGKTEECIGLCRALLAVVVWLLQGCAWYCEKLRELGPSASTETSLGACQERLQSLMNSTKNRALVHIARLEDQGSWSNVEQAVLNLTDGLSSVTNSKLHTKLEESLSLVKSIPLMLSEQSDPPVYASFPSVHAFIMLEGTMNLTGEIQPLVEQLMMIKRMQRIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQSDRGQDFMEDVNIAFQYLLKLTPLLDKADQRCNCDCLGMLLTECNKLGLLSDSNTVNLTSKRTEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPENPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSIPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYGENTLQFYNERVIIMSSIMEHMCADVFQQTGATLRSPVEGQEPIPYRNLLPPKEPIHTALSKQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWRSLADPPGKALAKLSVWCALSSYSSHHKGSFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSKMAGPHTQFVQSFMEECVECLEQGSRGSILQFMPFTMVYELVKLPALAKPKVVLAITDLTLPLGRRVAAKAISAL
Length989
PositionTail
OrganismMaylandia zebra (zebra mbuna)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Haplochromini> Maylandia> Maylandia zebra complex.
Aromaticity0.07
Grand average of hydropathy-0.041
Instability index47.44
Isoelectric point6.70
Molecular weight110677.50
Publications
PubMed=25186727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
enteric nervous system development	GO:0048484	IEA:Ensembl
interstitial cell of Cajal differentiation	GO:0061453	IEA:Ensembl
retinal cone cell development	GO:0046549	IEA:Ensembl
thymus development	GO:0048538	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23004
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.82|      11|      30|     304|     314|       1
---------------------------------------------------------------------------
  304-  314 (19.61/12.06)	AFTF.LKIPQVL
  336-  347 (15.21/ 7.63)	AFQYlLKLTPLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.35|      25|     164|     687|     711|       2
---------------------------------------------------------------------------
  687-  711 (45.95/31.65)	PVEGQEPIPYRNLLPPKEPIHTALS
  848-  872 (42.40/28.58)	PLDDTQPSKLMRLLSSNEDEPVALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.23|      17|     164|     196|     214|       5
---------------------------------------------------------------------------
  196-  212 (28.31/17.56)	LTDGLSSVTNSKL...HTKL
  904-  923 (23.92/ 8.16)	LFLLISSILGSKMagpHTQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      53.29|      13|     117|     289|     301|       6
---------------------------------------------------------------------------
  289-  301 (22.56/13.60)	GLI..ESPEG.....TEELK
  407-  421 (15.90/ 7.35)	GLIlrAEPTV.....TNILK
  426-  443 (14.84/ 6.35)	DHS..KSPEGllgvlGHMLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.48|      12|      34|     114|     125|      12
---------------------------------------------------------------------------
  114-  125 (22.17/13.21)	TEECIGLCRALL
  151-  162 (21.31/12.41)	TETSLGACQERL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23004 with Med24 domain of Kingdom Metazoa
Unable to open file!