<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23000

Description Uncharacterized protein
SequenceMKSCLPDKYCIAPQFDDFSRELCVKALLEIMDMFCHRLSCHGKAEECIGLCRALLGGVVWLLTGCAWYCERLRELGPSTSTDASLKGCQERLNNLLVSTKNRALVHIARLEDQASWTNVEQALHRLTDSLSRMTNHTLIGNLEECVSLVKSIPTMLSMRPDPPHHASFPSVHAFIMLEGTMNLTGETQPLVEQLMIIKRMQRIPTPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQAEKGQDFMDDVNIAFEYLLKLTPLLDKADQRCNCDCLSMLLQECNKLGLLSDSNTTNLTSKREYAPRMKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNNSSEMKLVQMKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGLDEREKPQTMIRQLMTPLYGENTLQFYNERVVIMSSILEHMCADVFQQTGLALRPPMEGQEPIPYRNLLPAKEPIHESLSKQFRSVLWKGWVDSHALHLFESLLHMGGVFWFTNNLIKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGHILPNLLTDPARWHSLADPPGKALAKLSVWCALSSFSSHHKGQASARQRKRQREDIEDYSNLFPLDDTQPSKLMRLLSSNEDEPVVLSSPGDRSMSTSLSASQLHTVNMRDPLNRVLANLFLLISSILGSKTAGSHTQFVQSFMEECVECLEQGSRGSILQFMPFTMVSELVKLPALAKPKVVLGITDLTLPLGRRVAAKAISAL
Length915
PositionTail
OrganismEsox lucius (Northern pike)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Esociformes> Esocidae> Esox.
Aromaticity0.06
Grand average of hydropathy-0.057
Instability index44.29
Isoelectric point6.53
Molecular weight102311.89
Publications
PubMed=25069045

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23000
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.78|      26|     115|     347|     372|       1
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  347-  372 (45.60/26.02)	KTVDADHSK.SPE.GLLGVLGHMLSGKS
  463-  490 (38.18/20.63)	KTLNPDHPCfRPEsGKVESLVALLNNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.50|      10|      15|     640|     649|       3
---------------------------------------------------------------------------
  640-  649 (21.38/10.85)	FRSVLWKGWV
  657-  666 (19.12/ 9.06)	FESLLHMGGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      24.51|      10|      15|     106|     118|       4
---------------------------------------------------------------------------
  116-  131 (12.35/ 8.11)	WTNveqalhRLTDSLS
  133-  147 (12.16/ 9.18)	MTN.htligNLEECVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.53|      14|      16|     203|     218|       5
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  213-  229 (16.37/14.93)	WKAcFT.glIESPEGTEE
  232-  248 (20.16/ 6.46)	WTA.FTflkIPQVLLRLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.60|      43|     388|      19|      65|       7
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   19-   65 (70.84/48.31)	SRELCVKALLEIMD..MFCHRLSCHGKAeecIGLCRALLGG.....VVWLLTgC
  408-  457 (66.76/34.61)	SKSASVRALLFDISflMLCHVVQTYGSE...VILSDPSPSGetpffETWLQT.C
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23000 with Med24 domain of Kingdom Metazoa
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