<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22984

Description Mediator complex subunit 24
SequenceMVSYSSVLTAISKFEDFSRELCVKSLLEIMDMFCHRLSCHGKAEECIGLCRALLGVVVWLLQGCAWYCERLRELGPSASTEASLRDCQERLHSLIKSTKNRALVHIARLEEQGSWSNVEQAVLKVTDALSSVPNQTMRTKLEESLSLVKSIPLLLSVQCDPPVRASFPSVHAFIMLEGTMNLTGETQPLVEQLMMIKRMQRIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDKGQDFMEDVNVAFHYLLKLTPLLDKADQRCNCDCLGMLLQECNKLGLLSDINTTSLTSKREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSPEMKLVQVKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYGENTLQFYNERVIIMSSIMEHMCADVFQQTAATLRPPVEGQEPIPYRNLLPAKEPIHKALSTQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWQSLADPPGKALAKLSVWCALSSYSSHHKGSFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPAALSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSKMAGPHTQFVQSFMEECVDCLEQGSRGSILQFMPFTMVSELVKLPALAKPKVVLAITDLTLPLGRRVAAKAISAL
Length914
PositionTail
OrganismAmphiprion percula (Orange clownfish) (Lutjanus percula)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Pomacentridae> Amphiprion.
Aromaticity0.06
Grand average of hydropathy-0.018
Instability index44.10
Isoelectric point6.87
Molecular weight101853.43
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22984
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.11|      28|      35|     123|     153|       2
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  123-  153 (40.82/34.49)	LKV.TD.....ALSSVPNQTMrtkLEESLSLV.KSIPL
  155-  189 (36.29/22.24)	LSVqCDppvraSFPSVHAFIM...LEGTMNLTgETQPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.90|      22|     115|     346|     367|       3
---------------------------------------------------------------------------
  320-  345 (31.15/22.59)	KTAENANIQPNPGLIlraePTVTNIL
  346-  367 (36.74/28.20)	KTVDADHSKSPEGLL....GVLGHML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     357.43|     108|     114|     604|     716|       4
---------------------------------------------------------------------------
  534-  598 (81.52/52.51)	.........................................KGKVCSMA.........ICAVAWLVAH.VRMLGRDEREKPQTMIRQLVTPLYGENTLQFyneRVIIMSSIMEHMC
  604-  716 (172.47/138.06)	QTAATlrPPVEGQEPIPYRNLLPAKEPIHKAlstQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQI...TLTLLGTILPNLL
  723-  794 (103.45/70.92)	QSLAD..PPGKALAKLSVWCALSSYSSHHKG...SFSARQRKR..QREDIEDYNSLFPLDDT..QPSKLMR.LLSSNEDEPA..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.64|      12|      35|      70|      81|       5
---------------------------------------------------------------------------
   70-   81 (19.71/10.31)	RLRELGPSASTE
   90-  101 (17.78/ 8.62)	RLHSLIKSTKNR
  108-  119 (20.16/10.70)	RLEEQGSWSNVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.53|      19|     388|      18|      41|       6
---------------------------------------------------------------------------
   23-   41 (36.31/28.13)	VKSLLEIMD..MFCHRLSCHG
  412-  432 (30.21/11.62)	VRALLFDISflMLCHVVQTYG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22984 with Med24 domain of Kingdom Metazoa
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