<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22969

Description Uncharacterized protein
SequenceMDLAMLLRFATASVTPDQRMLACLEALVKAEVLRWAVFIEVIAEFRQFSREYCIEALATILRNSVPLLKWCNYTSEKECVELSGSLMTVLNWCLLALEYSLKNENERSTQALIECTCAYANSKFVRALLYIHEHIGAESVSYVVEAAVSFAQSYPDCQELKTMIEALQQFGTLPAERIEDNLGGLVKQSHPAILTLVSVFEGFRMTKKVDQMADSFFELAEILEFPFSKMFEDMIRASLLIMLDAKESLGEELVASQAFYYVKLPQIVKHLLILGAPLDDLIVALDTICDNKTLLNQVDMKTKTNTFQHLLEQMAAAGVIDEDVLKNLLEKRSQYWPELFQMLAQTSSTPVHQPLILRANSAKMAVDKILRQPNNAVINVLLKLASGSGGLFTFDSVCASFCADGNLTYFSSKLAMINGQSERPAEGLDMDDERQRALAFNLSFILLTRIRFIYDDLRPSELVNGTVRGMDNTQSCFYKFASYYGWTAADSCGLSNAYTNEQKAAFVDRVNILKRAQPFWDPRTVNYAELVDFVPLIGEILLDDFRMTKFENYEHLHENIKNVLHAFRDDANFMIVCLVQWICSQPVTSPRQSMVKSFIRALEYPHQLNHTQQERMVLTSATCRRTLDDLSICDRLRDPRFTWIINCAKRKLPTVPFTLPATNAQSSDAEMLKQAFTYARQQAWGSPNVLQLVDRCNKAGVVENWCMVWLNAMLKLSTNDEMLCASELCLAAGIMSPVPCMLSFARSITEYIFEQNVDFGCVEPKALVSARFLVYCLQLAMHAYWRQQKERQTRVARGDCLERKRNDDDDSETDQGNPVERSILVIFEKFVRETKAGHLKSTVTFIYHFMVSLASAPQNAATRRIIELLPHDLMLNLARLDPQTFNLDLYLPLMNLCDIASTKTALQFTCLLRRLGGL
Length918
PositionTail
OrganismLitomosoides sigmodontis (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Litomosoides.
Aromaticity0.09
Grand average of hydropathy-0.005
Instability index48.32
Isoelectric point5.59
Molecular weight104240.42
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22969
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.99|      20|      29|       7|      34|       1
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   13-   34 (30.00/26.01)	SVTPDQRMLA...CLEALvkAEVLR
   40-   62 (29.99/ 9.64)	EVIAEFRQFSreyCIEAL..ATILR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.22|      51|      65|     413|     464|       2
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  413-  464 (82.45/59.71)	KLAMINGQSERPAEGL.DMDDERQRAlAFNLSFILLTRIRFIYD..DLRPSELVN
  479-  532 (81.78/54.71)	KFASYYGWTAADSCGLsNAYTNEQKA.AFVDRVNILKRAQPFWDprTVNYAELVD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.62|      25|      30|     288|     313|       3
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  288-  313 (37.83/37.05)	ICDNKTLLNQVDMKTK..TNTFQhLLEQ
  319-  345 (35.79/27.95)	VIDEDVLKNLLEKRSQywPELFQ.MLAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.33|      15|     473|     124|     138|       6
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  124-  138 (28.08/21.78)	FVRALLYIHE..HIGAE
  598-  614 (25.25/18.79)	FIRALEYPHQlnHTQQE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.83|      63|     633|      89|     166|       7
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   75-  152 (97.08/62.25)	SEKECVELSGSLMTVLNWCLLALEYSLK.NENERSTQALIECTCAYANSKfvrallyihehigaeSVS.YVVEAAVSFAQ
  153-  176 (20.27/ 7.08)	SYPDCQELKTMIEALQQFGTLPAE........................................................
  702-  761 (64.47/38.83)	..............VENWCMVWLNAMLKlSTNDEMLCASELCLAAGIMSP......vpcmlsfarSITeYIFEQNVDFGC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22969 with Med24 domain of Kingdom Metazoa
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