<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22966

Description Uncharacterized protein
SequenceMEMEMEMEKTRGGESEESERRKLILLEKVKECLSQRQDQRREESPLVWAMEVVKCLKSLKMEMPSPDLAEILVSHLCFDNNNASTWKFLQQALSSRLLSPLHVLSLLSSRVIPNRRSQPEAYRLFLELFSRYAFSLDTAVDDACRDKIINSVDAALQLSRTYEVRLSELGQLLVLFFFTVFVGLIDSTFDDMGLQIKSSDIQEGPLGTDNFQDMDMDSRGDYSVERNEHRELLRKKNTIMSMEVLAKLMESRKAVVLLRLVHFNMPEKFHGLLQRLWFSEANKLASSSMKPASQFFERFSASIRNVCDFEYQLNKGQLVRMLTDIRQPNKRLSYCNSESVQSACWAPFDIYLEHIMDGKQLLITSGVSMLTETIMLLQVFNRASWQETFLALWLSALRLVQREHDPLEGPIPHLESRLCILLTIVPLAIANIMDDEAKFCSSSLQGAAKSGFIEIDGHENQVDGKGQTSRKNGLISSLQVLGQFSGLLCPPASVIGAANAAAVKAASFISNSKSARGDSVCGTHSDSDINAGGNLRHLIIEACIARKLIDTSVYYWPGYVSASVISFIDLPPAQKSPWVIFMEGTPFSNSLVNFLLATPAPSLAEIEKLYDIALNGSVEERSAAAKILCGASLSRGWNIQEHVLHYVVKLLSPPKPSTHTGQRNHLIDYMPMLSAILSGASSIDTVHVLSLHGLIPEVAASLMPLCEVFGSLMPTSSNISSKGDEPSIYMVFSSAFLFLLRLWKFYRPPIEQCLTGGGAIGGELTLEYLLLLRNGRIASHNYSAQDEINSNQVQHEYSSDKPEYVDFYPKLRAWYCQNKSCIASPLSGISTGNPVHEVANKILNMIYRKMTKSGSSSGNSSTVTSNSLCGSSPSTAEDPYQRPMLPAWDVLEAIPFVLEAILTACAHGRLSSRDLTTGLRDLIDFLPATLGTIVTYFAAEITRGIWKPVPMNGTDWPSPAAILSAVDSEIKEILAAAGVDFPCGSSGISPS
Length991
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy-0.039
Instability index51.53
Isoelectric point5.75
Molecular weight109672.65
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22966
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.59|      12|     106|     511|     522|       1
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  511-  522 (22.12/12.77)	NSKSARGDSVCG
  859-  870 (20.47/11.25)	NSSTVTSNSLCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.93|      49|     361|     567|     632|       2
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  567-  632 (74.76/77.16)	FIDLPPAQKSPWVIF..............MEGTPFsnslvnfllatpaPSLAEIEKlydiALNGSVEERSAAAKI..LCGAS
  922-  986 (74.17/44.76)	LIDFLPATLGTIVTYfaaeitrgiwkpvpMNGTDW.............PSPAAILS....AVDSEIKEILAAAGVdfPCGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.71|      65|     360|      40|     113|       3
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   40-  113 (98.11/92.61)	RREESPL...VWAMEVVKCLksLKMEMPSPdLAEILVSHLCFDNNNastwkfLQQALSSR......................LLSPLHVLSLLSSRVIP
  401-  490 (94.61/64.25)	QREHDPLegpIPHLESRLCI..LLTIVPLA.IANIMDDEAKFCSSS......LQGAAKSGfieidghenqvdgkgqtsrkngLISSLQVLGQFSGLLCP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22966 with Med33 domain of Kingdom Viridiplantae
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